<HashMap><database>ENA</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/000/ERR3773720/ERR3773720.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3773727/ERR3773727.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/008/ERR3773718/ERR3773718.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/004/ERR3773714/ERR3773714.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/000/ERR3773690/ERR3773690.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3773687/ERR3773687.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/004/ERR3773724/ERR3773724.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/008/ERR3773708/ERR3773708.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3773711/ERR3773711.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/000/ERR3773730/ERR3773730.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3773697/ERR3773697.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3773705/ERR3773705.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/002/ERR3773702/ERR3773702.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3773715/ERR3773715.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3773721/ERR3773721.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/008/ERR3773698/ERR3773698.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/004/ERR3773694/ERR3773694.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3773719/ERR3773719.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3773725/ERR3773725.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/008/ERR3773688/ERR3773688.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/006/ERR3773706/ERR3773706.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3773691/ERR3773691.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3773709/ERR3773709.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/008/ERR3773728/ERR3773728.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/002/ERR3773712/ERR3773712.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3773729/ERR3773729.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3773695/ERR3773695.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/006/ERR3773716/ERR3773716.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/002/ERR3773722/ERR3773722.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3773703/ERR3773703.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3773699/ERR3773699.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3773707/ERR3773707.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3773713/ERR3773713.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3773689/ERR3773689.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/000/ERR3773700/ERR3773700.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/002/ERR3773692/ERR3773692.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/006/ERR3773696/ERR3773696.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/004/ERR3773704/ERR3773704.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/006/ERR3773726/ERR3773726.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/000/ERR3773710/ERR3773710.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3773723/ERR3773723.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3773693/ERR3773693.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3773717/ERR3773717.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3773701/ERR3773701.fastq.gz</Fastqsanger.gz></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Genomics</omics_type><center_name>EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN</center_name><full_dataset_link>https://www.ebi.ac.uk/ena/browser/view/PRJEB35931</full_dataset_link><long_description>The PIDDosome is a multimeric protein complex that activates caspase-2 in response to supernumerary centrosomes. In polyploid hepatocytes, this pathway is activated to induce a p53-depenent cell cycle arrest. Thereby, the PIDDosome controls the upper limit of hepatic ploidy during development and regeneration. Since caspase-2 has been suggested to delete aneuploid cancer cells [1, 2], we employed single cell sequencing techniques to test whether caspase-2 itself or caspase-2 mediated p53 activation are involved in this process during hepatocarcinogenesis. Murine liver tumors were induced using diethylnitrosamine (DEN, 25mg /kg, i.p.) injected at the age of 15 days and analyzed 10 months later. Nuclei of tumor tissue of ten wt or caspase-2 deficient mice were isolated and per tumor 30 diploid and tetraploid cells were sorted and sequenced in bulk. Our data suggest that tetraploid tumor cells tend to have a higher degree of aneuploidy which is independent of caspase-2 as both wt and caspase-2 deficient tumors showed a similar degree of copy number variation. 1) López-García, C., Sansregret, L., Domingo, E., McGranahan, N., Hobor, S., Birkbak, N. J., … Swanton, C. (2017). BCL9L Dysfunction Impairs Caspase-2 Expression Permitting Aneuploidy Tolerance in Colorectal Cancer. Cancer Cell, 31(1), 79–93. https://doi.org/10.1016/j.ccell.2016.11.0012) Dawar, S., Lim, Y., Puccini, J., White, M., Thomas, P., Bouchier-Hayes, L., … Kumar, S. (2017). Caspase-2-mediated cell death is required for deleting aneuploid cells. Oncogene, 36(19), 2704–2714. https://doi.org/10.1038/onc.2016.423</long_description><repository>ENA</repository><description_synonyms>Nedd2, Aneuploids, Carcinoma, Procaspase-2, Controlling, preventive therapy, Liver, Caspase-2, Cell Carcinoma, Liver Cell, adult hepatoma, Hepatomas, Liver Cell Carcinoma, Cell, prevention, ICH1, Cell Carcinomas, Aneuploidies, HCC, chromosome number anomaly, Liver Cell Carcinomas, Hepatocellular Carcinoma., Caspase 2 Subunit p12, Adult Liver Cancer, Adult Liver, ICH-1, prevention and control, Aneuploid Cell, Carcinomas, reference sample, Adult Liver Cancers, Hepatocellular carcinoma, Liver Cancer, Aneuploid, Hepatoma, prophylaxis, Pro Caspase 2, Caspase 2 Subunit p13, adult primary hepatocellular carcinoma, Liver Cancers, Caspase 2 Subunit p18, Cancers, Adult, preventive measures, Aneuploid Cells, ICH 1 Protease, Procaspase 2, control, Pro-Caspase-2, Cells, NEDD2, Hepatocellular, ICH-1 Protease, Hepatocellular Carcinomas, Controlled, Cancer</description_synonyms><name_synonyms>Nedd2, Aneuploids, Carcinoma, Procaspase-2, Controlling, preventive therapy, Liver, Caspase-2, Cell Carcinoma, Liver Cell, adult hepatoma, Hepatomas, Liver Cell Carcinoma, Cell, prevention, ICH1, Cell Carcinomas, Aneuploidies, HCC, chromosome number anomaly, Liver Cell Carcinomas, Hepatocellular Carcinoma., Caspase 2 Subunit p12, Adult Liver Cancer, Adult Liver, ICH-1, prevention and control, Aneuploid Cell, Carcinomas, reference sample, Adult Liver Cancers, Hepatocellular carcinoma, Liver Cancer, Aneuploid, Hepatoma, prophylaxis, Pro Caspase 2, Caspase 2 Subunit p13, adult primary hepatocellular carcinoma, Liver Cancers, Caspase 2 Subunit p18, Cancers, Adult, preventive measures, Aneuploid Cells, ICH 1 Protease, Procaspase 2, control, Pro-Caspase-2, Cells, NEDD2, Hepatocellular, ICH-1 Protease, Hepatocellular Carcinomas, Controlled, Cancer</name_synonyms></additional><is_claimable>false</is_claimable><name>Caspase-2 and the PIDDosome do not control aneuploidy in hepatocellular carcinoma</name><description>Caspase-2 and the PIDDosome do not control aneuploidy in hepatocellular carcinoma</description><dates><last_updated>2019-12-20</last_updated><first_public>2020-09-08</first_public></dates><accession>PRJEB35931</accession><cross_references/></HashMap>