{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/006/ERR4264666/ERR4264666_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/002/ERR4264662/ERR4264662_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/003/ERR4264663/ERR4264663_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/005/ERR4264665/ERR4264665_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/002/ERR4264662/ERR4264662_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/004/ERR4264664/ERR4264664_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/000/ERR4264660/ERR4264660_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/003/ERR4264663/ERR4264663_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/001/ERR4264661/ERR4264661_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/001/ERR4264661/ERR4264661_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/005/ERR4264665/ERR4264665_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/006/ERR4264666/ERR4264666_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/000/ERR4264660/ERR4264660_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR426/004/ERR4264664/ERR4264664_2.fastq.gz"]},"type":"primary"},"statusCodeValue":200,"statusCode":"OK"}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["JIC","The John Innes Centre"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJEB38923"],"long_description":["Initially from time-course RNAseq (Sohn et al 2014 PLoS genetics), we identified ETI-specific early elevated genes in comparison to PTI with PTI plus ETI. In order to study how the early response genes activated by ETI, we performed ATACseq at early timepoint using Pf0-1 to deliver effector and activate ETI in the presence of PTI, as well as using SETI (Ngou et al 2019 JXB), an inducible ETI system to activate ETI in the absence of PTI. We have also included mutant effector of AvrRps4 (KRVY135-138AAAA) as a control for wild-type (WT) AvrRps4, which induce ETI via recognition by two paired R proteins RPS4 and RRS1. We included gh (sard1 cbp60g) double mutant of two functionally redundant transcription factors (TFs) in this study, to address the function relevance of TF and changes in chromatin accessibility in response to PTI and ETI at early time points of immune activation."],"repository":["ENA"],"description_synonyms":["nuclear chromatin, HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, SPI3, pattern-triggered immunity, cytoplasmic chromatin, ChIP-Chip, wide/broad, Chromatin Immuno-precipitation, A., Cross Linking and Immunoprecipitation Followed by Deep Sequencing, Arabidopsis thaliana, ChIP Sequencing, CLIP-Seq, A. thaliana, broad, Assay for Transposase-Accessible Chromatin Using Sequencing, ChIP-PET, ChIP-Exo, Cardaminopsis, Arabidopsis thalianas, A. thalianas, Chromatin Immunoprecipitation Sequencing-Chip, thalianas, CAP, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, Chromatins, ChIA-PET, Chromatin Immunoprecipitation Sequencing Chip, PTI, Chromatin Immuno precipitation Sequencing, DFNB91, PI-6, ATAC-seq assay, Genomes, Cresses, ChIP, Chromatin Immunoprecipitation Paired End Tag, ATAC-seq, Chromatin Immuno Precipitation Paired End Tag, Mouse-ear Cress, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, thaliana, Chromatin Immunoprecipitation, PI6., Chromatin Immuno-precipitation Sequencing, MSTP057, whole genome, ChIP Exonuclease, Mouse-ear Cresses, ChIP-Seq, Sequencing, Mouse-ear, Assay for Transposase Accessible Chromatin Using Sequencing, Chromatin Immunoprecipitation Paired-End Tag, wide, Arabidopsis, Chromatin Immuno-Precipitation Paired-End Tag, chromosome scaffold, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, Cress, Mouse ear, Arabidopses, ChIP-Exonuclease"],"name_synonyms":["nuclear chromatin, HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, SPI3, pattern-triggered immunity, cytoplasmic chromatin, ChIP-Chip, wide/broad, Chromatin Immuno-precipitation, A., Cross Linking and Immunoprecipitation Followed by Deep Sequencing, Arabidopsis thaliana, ChIP Sequencing, CLIP-Seq, A. thaliana, broad, Assay for Transposase-Accessible Chromatin Using Sequencing, ChIP-PET, ChIP-Exo, Cardaminopsis, Arabidopsis thalianas, A. thalianas, Chromatin Immunoprecipitation Sequencing-Chip, thalianas, CAP, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, Chromatins, ChIA-PET, Chromatin Immunoprecipitation Sequencing Chip, PTI, Chromatin Immuno precipitation Sequencing, DFNB91, PI-6, ATAC-seq assay, Genomes, Cresses, ChIP, Chromatin Immunoprecipitation Paired End Tag, ATAC-seq, Chromatin Immuno Precipitation Paired End Tag, Mouse-ear Cress, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, thaliana, Chromatin Immunoprecipitation, PI6., Chromatin Immuno-precipitation Sequencing, MSTP057, whole genome, ChIP Exonuclease, Mouse-ear Cresses, ChIP-Seq, Sequencing, Mouse-ear, Assay for Transposase Accessible Chromatin Using Sequencing, Chromatin Immunoprecipitation Paired-End Tag, wide, Arabidopsis, Chromatin Immuno-Precipitation Paired-End Tag, chromosome scaffold, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, Cress, Mouse ear, Arabidopses, ChIP-Exonuclease"],"additional_accession":[]},"is_claimable":false,"name":"Genome-wide ATAC-seq on Arabidopsis for studying the regulatory chromatin landscape of PTI and ETI","description":"Genome-wide ATAC-seq on Arabidopsis for studying the regulatory chromatin landscape of PTI and ETI","dates":{"last_updated":"2021-06-16","first_public":"2021-06-16"},"accession":"PRJEB38923","cross_references":{}}