{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/002/ERR9579462/ERR9579462.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/003/ERR9579473/ERR9579473.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/007/ERR9579467/ERR9579467.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/008/ERR9579468/ERR9579468.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/001/ERR9579471/ERR9579471.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/000/ERR9579460/ERR9579460.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/005/ERR9579465/ERR9579465.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/001/ERR9579461/ERR9579461.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/004/ERR9579474/ERR9579474.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/003/ERR9579463/ERR9579463.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/000/ERR9579470/ERR9579470.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/006/ERR9579466/ERR9579466.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/004/ERR9579464/ERR9579464.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/009/ERR9579469/ERR9579469.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR957/002/ERR9579472/ERR9579472.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["UNIVERSITY OF VIENNA"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJEB52258"],"tag":["xref:EuropePMC:PMC9272787"],"long_description":["In Pseudomonas aeruginosa, the RNA chaperone Hfq and the catabolite repression protein Crc act in concert to regulate numerous genes during carbon catabolite repression (CCR). After alleviation of CCR, the RNA CrcZ sequesters Hfq/Crc, which leads to a rewiring of gene expression to ensure the consumption of less preferred carbon and nitrogen sources. Here, we performed a multiomics approach by assessing the transcriptome, translatome and proteome in parallel in P. aeruginosa strain O1 during and after relief of CCR. As the activity of Hfq is negatively controlled by the RNA CrcZ upon relief of CCR, and Hfq is known to impact antibiotic susceptibility in P. aeruginosa, emphasis was laid on links between CCR and antibiotic susceptibility. To this end, we show that the mexGHI-opmD operon encoding an efflux pump for the antibiotic norfloxacin and the virulence factor 5-Methyl-phenazine is up-regulated after alleviation of CCR, resulting in a decreased susceptibility to the antibiotic norfloxacin. A model for indirect regulation of the mexGHI-opmD operon by Hfq is presented."],"repository":["ENA"],"description_synonyms":["Regulations, pabp2, PAB2, Gene Expressions, growth pattern, Peudomonas aeruginosa, Formal Social Control, opmd, non-developmental growth, oculopharyngeal, postnatal development, Pseudomonas pyocyanea, postnatal growth, Control, PABP-2, muscular dystrophy, Gene, PABII, growth and development, PABP2, efflux pump., Controls, Bacterium pyocyaneum, Expressions, Bacillus pyocyaneus, OPMD, Social Controls, Social, efflux transmembrane transporter complex, pabpn1, development, Pseudomonas polycolor, Micrococcus pyocyaneus, Social Control, Bacterium aeruginosum, oculopharyngeal muscular dystrophy, probable synonym or variety: \"Pseudomonas polycolor\" Clara 1930, regulation, Expression, pab2, Bacillus aeruginosus, Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980), growth, Regulation, Formal Social Controls, pabpii"],"name_synonyms":["postnatal growth, development, growth and development, postnatal development., growth, growth pattern, non-developmental growth"],"additional_accession":[]},"is_claimable":false,"name":"Multi-Omics of PA01 during diauxic growth","description":"Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq","dates":{"last_updated":"2022-05-05","first_public":"2022-05-05"},"accession":"PRJEB52258","cross_references":{}}