{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR655/ERR655303/ERR655303.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR655/ERR655302/ERR655302.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR655/ERR655301/ERR655301.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium","European Bioinformatics Institute"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJEB7532"],"broker_name":["ArrayExpress"],"tag":["xref:ArrayExpress:E-MTAB-3019"],"long_description":["To identify the genomic binding sites of FRS12, Tandem Chromatin Affinity Purification - Seq (TChAP-Seq) was performed on 7-d-old Pro35S:FRS12-HBH and Pro35S:NLS-GFP-HBH expressing Arabidopsis thaliana PSB-D cells. Cultures were transferred to long days (16:8) conditions two weeks before harvesting at day time (DT) at zeitgeber time (ZT) 4 (time of lights on usually defines zeitgeber time zero) or night time (NT) at ZT20. Chromatin was isolated from formaldehyde-treated cell cultures following two affinity purification steps first by IMAC using a Ni-NTA Superflow resin (Qiagen), then by a Biotin binding step using a Streptavidin Sepharose resin (GE Healthcare). Finally, protein-DNA bound fragments were decrosslinked, deproteinized and purified using QIAquick PCR Purification Kit (Qiagen). DT and NT Pro35S:FRS12-HBH samples were carried in two replicates whereas background DT and NT Pro35S:NLS-GFP-HBH samples were prepared in single replicates. The TChAP DNA samples were processed by first preparing a TruSeq ChIPseq library (Illumina) and then sequenced using Illumina HiSeq 2000 at 50bp single read at an average depth of 15 million reads."],"repository":["ENA"],"additional_accession":[]},"is_claimable":false,"name":"Genome-Wide Identification of the FRS12 Binding Sites by Tandem Chromatin Affinity Purification - Seq Analysis in Arabidopsis thaliana","description":"Genome-Wide Identification of the FRS12 Binding Sites by Tandem Chromatin Affinity Purification - Seq Analysis in Arabidopsis thaliana","dates":{"last_updated":"2016-05-20","first_public":"2016-10-12"},"accession":"PRJEB7532","cross_references":{}}