ENAGenomicsInstitut national de recherche pour l'agriculture, l'alimentation et l'environnementphilippehttps://www.ebi.ac.uk/ena/browser/view/PRJEB75759Both the quality of chicken meat and the robustness of the young chicks are influenced by the level of breast muscle glycogen reserves. In order to study the role of digestive metabolism in establishing this muscular phenotype, we compared two divergent chicken lines for the ultimate pH (pHu) of the breast meat, a proxy for glycogen reserves. Males aged 4 weeks had twice the breast muscle glycogen content in the pHu- line (low pHu) than in the pHu+ line (high pHu). The increase in glycogen reserves (pHu-) is associated with a higher relative weight of the proventriculus and gizzard, as well as better apparent ileal digestibility of nitrogen and calcium. The diversity of the caecal microbiota was comparable, but three bacterial genera (Lachnospira, Lachnospiraceae UCG-010, Caprociproducens) varied between the lines. The differences observed could lead to down-regulation of carbon fixation in prokaryotes and of the citrate cycle in the pHu+ line. RNA-seq analysis of the jejunum, the site of nutrient absorption, revealed 149 genes differentially expressed (DE) between the lines, including several genes linked to immunity, hormonal response and circadian rhythms that are less expressed in pHu+ animals. Others involved in cell migration and proliferation, and more generally tissue morphogenesis, also differ between the lines. Among the DE genes, several co-localize with pHu-QTLs and regions under selection identified in the lines, such as the GHRL gene coding for ghrelin, a hormone regulating appetite.ENAfalseImplication of digestive functions and microbiota in the establishment of muscle glycogen differences between divergent lines for ultimate pHImplication of digestive functions and microbiota in the establishment of muscle glycogen differences between divergent lines for ultimate pH2024-08-012024-08-01PRJEB75759