ENAapplication/xmlftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/072/SRR30149072/SRR30149072_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/084/SRR30149084/SRR30149084_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/088/SRR30149088/SRR30149088_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/069/SRR30149069/SRR30149069_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/076/SRR30149076/SRR30149076_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/085/SRR30149085/SRR30149085_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/073/SRR30149073/SRR30149073_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/081/SRR30149081/SRR30149081_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/067/SRR30149067/SRR30149067_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/075/SRR30149075/SRR30149075_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/087/SRR30149087/SRR30149087_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/070/SRR30149070/SRR30149070_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR318/085/SRR31828385/SRR31828385_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/078/SRR30149078/SRR30149078_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/079/SRR30149079/SRR30149079_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/082/SRR30149082/SRR30149082_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/089/SRR30149089/SRR30149089_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/086/SRR30149086/SRR30149086_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/083/SRR30149083/SRR30149083_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/074/SRR30149074/SRR30149074_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/068/SRR30149068/SRR30149068_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/080/SRR30149080/SRR30149080_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/071/SRR30149071/SRR30149071_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR301/077/SRR30149077/SRR30149077_1.fastq.gzprimaryOK200GenomicsInstitute of Environmental Science and Researchhttps://www.ebi.ac.uk/ena/browser/view/PRJNA1144171Staphylococcus aureusStaphylococcus aureus colonises the nasal cavity of around 1 in 3 people. Despite medical advances, S. aureus infections remain a public health concern, especially among vulnerable Neonatal Intensive Care Unit (NICU) patients. Outbreaks of methicillin-resistant S. aureus (MRSA) are well described in the NICU setting. Genomics has revolutionised the investigation of such outbreaks, however to date this has largely been in a retrospective fashion, and has typically relied on short-read platforms. To detect potential transmission events in a way that would permit early remedial action from our local Infection Prevention and Control (IPC) team, we established a simplified prospective genomic surveillance program in our laboratory using Oxford Nanopore Technologies (ONT) sequencing. This data represents S. aureus genomes collected from Wellington Regional Hospital in 2023.pathogen:prioritypathogen:bacteriumpathogenbacteriaENAfalseStaphylococcus aureusStaphylococcus aureus Raw sequence reads2025-09-242025-03-17PRJNA11441711280