{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/085/SRR32063785/SRR32063785_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/081/SRR32063781/SRR32063781_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/084/SRR32063784/SRR32063784_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/083/SRR32063783/SRR32063783_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/086/SRR32063786/SRR32063786_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/081/SRR32063781/SRR32063781_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/082/SRR32063782/SRR32063782_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/084/SRR32063784/SRR32063784_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/086/SRR32063786/SRR32063786_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/085/SRR32063785/SRR32063785_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/083/SRR32063783/SRR32063783_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/082/SRR32063782/SRR32063782_1.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Changchun university"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA1213783"],"scientific_name":["Mus musculus"],"tag":["xref:PubMed:40251266"],"long_description":["Acanthopanax senticosus is a unique wild resource in Northeast China. Its main active ingredient is polysaccharide, which has prominent immunomodulatory effect. In this study, the purified polysaccharide component of Acanthopanax senticosus leaves (ASPS-A1) with strong immunomodulatory activity was isolated by column chromatography, and its structure and properties were characterized by HPGPC, FT-IR. Results showed that ASPS-A1 is mainly composed of α-1,4-D-GalA, α-1,5-L-Ara, and β-1,4-D-Gal. RT-qPCR experiments and RNA-seq analysis was used to study the immunoregulatory mechanism of ASPS-A1. The results showed that ASPS-A1 could significantly up-regulated the levels of cytokines iNOS, IL-1β, IL-6 and TNF-α activated macrophages through MAPK, NF-κB, and Toll-like receptor signaling pathways. Inhibitory experiments were further confirmed that ASPS-A1 promote the expression of iNOS, TNF-α, and IL-6 via TLR4 receptor, and TNF-α and IL-1β via TLR2 receptor. In order to identify the target of ASPS-A1, molecular docking experiments were conducted. The results demonstrated that ASPS-A1 could bind to both TLR4 and TLR2, forming stable complexes with the cavities on the protein surface through hydrogen bonding and hydrophobic interaction. The docking scores indicated that ASPS-A1 could regulate the immune response through TLR2 and TLR4 signaling pathways, with a particularly strong interaction with TLR4. In summary, this study screened and characterized the most immunoreactive components of Acanthopanax senticosus polysaccharide, disclosed the immunomodulatory mechanism of ASPS-A1, and furnished a research basis for its potential application as a natural immune enhancer. Overall design: The RNA-seq analysis was performed on RAW 264.7 cells. RAW 264.7 cells were cultured in 6-well plates at a concentration of 2×105 cells/mL for 24 h, then the supernatant was discarded, and the medium containing ASPS-A1 (200 μg/mL) was added. The cells were collected for 24 h, treated with 1 mL Trizol, and immediately placed in a refrigerator at -80 ℃. Fresh Acanthopanax senticosus leaves were taken and extracted with ultrasonic-assisted extraction at a material-liquid ratio of 1:20, rotary evaporation, alcohol precipitation, and lyophilization to obtain Acanthopanax senticosus leaves crude polysaccharide (ASPS). DEAE cellulose-52 column was used to separate and purify ASPS, and the acidic polysaccharide (ASPS-A) and neutral polysaccharide (ASPS-N) were obtained. ASPS-A was further isolated and purified using a Superdex-G100 gel column and eluted by NaCl at a flow rate of 0.15 mL/min. The liquid was collected, dialyzed, and freeze-dried to obtain ASPS-A1."],"repository":["ENA"],"additional_accession":[]},"is_claimable":false,"name":"Immune regulation mechanism of polysacchride extracted from Acanthopanax senticosus on RAW 264.7 cells through activating the TLR/MAPK/NF-κB signaling pathway","description":"Immune regulation mechanism of polysacchride extracted from Acanthopanax senticosus on RAW 264.7 cells through activating the TLR/MAPK/NF-κB signaling pathway","dates":{"last_updated":"2025-09-24","first_public":"2025-04-26"},"accession":"PRJNA1213783","cross_references":{"GEO":["GSE287586"],"taxon":["10090"],"PubMed":["40251266"]}}