{"database":"ENA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics","Multiomics"],"center_name":["Terrestrial biofilms, Institute of Microbiology, Friedrich Schiller University of Jena"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA170132"],"scientific_name":["Bacillus subtilis"],"long_description":["Detailed description (other than provided below) of growth conditions, RNA preparation, cDNA synthesis and hybridization conditions can be found in the submitted paper. Overall design: GSM956794-GSM956801: Bacillus subtilis 168 wild type and its ymdB derivative strain were grown in CSE-Glu medium and cells were harvested at mid exponential (OD600 ~0.8) and early stationary phase (OD600 ~2.2-2.4). For both time points, 4 biological replicates were used, resulting 4 slides for both exponential and stationary phase. Dye swaps are included in both experiments. GSM1011025-GSM1011032: Bacillus subtilis GP966 antibiotic tagged synthetic wild type and its ymdB E39Q point mutant strain GP969 were grown in CSE-Glu medium and cells were harvested at mid exponential (OD600 ~0.8) and early stationer phase (OD600 ~2.2-2.4). For both time points, 4 biological replicates were used, resulting 4 slides for both exponential and stationer phase. Dye swaps are included in both experiments."],"tag":["xref:PubMed:24163345"],"repository":["ENA"],"description_synonyms":["Polyadenylated Messenger RNA, Bacillus subtilis var. natto, RNA, Bacillus natto, Poly(A)+ RNA, Non Polyadenylated mRNA, protein_coding_transcript, mRNA, Poly(A) Tail, Polyadenylated, Bacillus mesentericus, Polyadenylated Messenger, Bacillus subtilis8, Bacillus uniflagellatus., Non-Polyadenylated, Messenger RNA, messenger RNA, Bacillus subtilis/Bacillus globigii, inositol/phosphatidylinositol phosphodiesterase activity, Bacillus subtilis (natto), Non-Polyadenylated mRNA, Phosphodiesterase, Phosphoric Diester, template RNA, Messenger, Vibrio subtilis, Poly(A)+ mRNA, Bacillus subtilis subsp. natto, INSDC_feature:mRNA, endonuclease VIII activity, inositol or phosphatidylinositol phosphodiesterase activity, Natto Bacteria, Bacillus globigii, Polyadenylated RNA, Biofilm, Hydrolases, regulator, Polyadenylated mRNA, phosphodiesterase, Non Polyadenylated, Poly(A) RNA, Phosphodiesterases"],"name_synonyms":["Bacillus subtilis8, Bacillus subtilis var. natto, Bacillus uniflagellatus., Natto Bacteria, Bacillus natto, Bacillus globigii, Bacillus subtilis/Bacillus globigii, Vibrio subtilis, Bacillus mesentericus, Bacillus subtilis subsp. natto, Bacillus subtilis (natto)"],"additional_accession":[]},"is_claimable":false,"name":"Bacillus subtilis","description":"The YmdB phosphodiesterase is a global regulator of biofilm-specific mRNA levels in Bacillus subtilis","dates":{"last_updated":"2025-09-24","first_public":"2014-02-11"},"accession":"PRJNA170132","cross_references":{"GEO":["GSE39142"],"taxon":["1423"],"PubMed":["24163345"]}}