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Core, Genomics Institute of the Novartis Research Foundationhttps://www.ebi.ac.uk/ena/browser/view/PRJNA283222Rattus norvegicusPurpose: Single-cell whole transcriptome sequencing was used to better understand the mechanism of action of our Dyrk1a inhibitor's proliferation of pancreatic islets. Methods: primary pancreatic islets were isolated, cultured, and stimulated with either 0.1% DMSO or 3 µM GNF4877. Single cells were captured and cDNA isolated on a Fluidigm C1 instrument. Sequencing libraries were made with Nextera XT reagents (Illumina) and single-end 50 bp reads were generated on an Illumina HiSeq 1000. Reads were mapped to the rat transcriptome. Results: Consistent with GNF4877 eliciting beta cell proliferation, we observed an increase in the number of beta cells co-expressing insulin 1 and genes involved in cell cycle including the M phase marker Cyclin B1. Comparison of Cyclin B1 expressing cells from GNF4877-treated islets to beta cells from DMSO-treated islets further revealed a significant increase expression of genes associated with full cell cycle progression and enrichment of Gene Ontology (GO) categories for proliferation. Conclusions: Since only a small subset of islet cells proliferate when stimulated with GNF4877, single-cell transcriptome sequencing allowed us to examine expression of genes co-regulated with known proliferation markers and will hopefully allow us to characterize beta cell subsets which are responsive to proliferation-associated therapies. Overall design: 84 GNF4877-treated and 86 DMSO-treated rat islet cells containing greater than 100,000 mapped sequencing reads per cell and having a single verified cell per port were comparedxref:PubMed:26496802ENAMNB, Multiplication, MNBH, mmb, GSK-3beta, DYRK1, gsk-3, Growth, human being, Cellular Proliferation, Man (Taxonomy), 2310043O08Rik, GSK-3, xgsk-3, C86142, Dyrk, Gm10783, Modern, gsk3-beta, GSK3, man, gsk3beta, human, Cell, Cell Growth in Number, Human, D16Ertd272e, Mnbh, 8430431H08Rik., cell proliferation, gsk3, PSK47, Mp86, HP86, Homo sapiens, 7330414F15Rik, Proliferation, Modern Man, Cell Multiplication, DYRK, Cell Number Growth, Cell Number, Cellular, Number Growth, Man, ENSMUSG00000074897, MRD7, D16Ertd493ebrown rat, Laboratory Rat., Rattus sp. strain Wistar, rat, Rat, Mus norvegicus, Rattus norvegicus, Rattus norwegicus, Rats, norvegicus, Laboratory, Laboratory Rats, Norway rat, Norway Rat, Norway, Rattus rattiscus, Rattus, rat <Rattus norvegicus>, rats <Rattus norvegicus>, rats, Norway Rats, Rattus norvegicus8, Gunn ratsfalseRattus norvegicusHuman beta cell proliferation induced by inhibition of Dyrk1a and GSK3b2025-09-242015-05-15PRJNA283222GSE686251011626496802