ENAapplication/xmlftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/009/SRR2078939/SRR2078939_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/004/SRR2078934/SRR2078934_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/003/SRR2078933/SRR2078933_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/006/SRR2078936/SRR2078936_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/002/SRR2078932/SRR2078932_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/005/SRR2078935/SRR2078935_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/007/SRR2078937/SRR2078937_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/008/SRR2078938/SRR2078938_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/004/SRR2078934/SRR2078934_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/005/SRR2078935/SRR2078935_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/001/SRR2078931/SRR2078931_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/006/SRR2078936/SRR2078936_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/002/SRR2078932/SRR2078932_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/001/SRR2078931/SRR2078931_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/003/SRR2078933/SRR2078933_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/009/SRR2078939/SRR2078939_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/008/SRR2078938/SRR2078938_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/007/SRR2078937/SRR2078937_2.fastq.gzprimary200OKGenomicsWierzbicki lab, Molecular, Cellular, and Developmental Biology, University of Michiganhttps://www.ebi.ac.uk/ena/browser/view/PRJNA288172Arabidopsis thalianaWe report genome-wide detection of long noncoding RNA (lncRNA) generate by Pol V in transcriptional gene silencing in Arabidopsis thaliana. We further show that most of these transcripts are bound by AGO4. Overall design: RNA immunoprecipitation followed by high-throughput sequencing (RIP-seq) RNA immunoprecipitation with an anti-AGO4 antibody was performed in one biological replicate and included Col-0, nrpe1, and ago4-1 RNA immunoprecipitation with an anti-NRPE1 (largest subunit of Pol V) was performed in two replicates replicate 1 included Col-0 and nrpe1, replicated two included Col-0, nrpe1, ago4-1, and idn2-1xref:PubMed:27779094ENAfalseArabidopsis thalianaLong non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin2025-09-242023-03-28PRJNA288172GSE70290370227779094