{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/006/SRR2927536/SRR2927536_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/004/SRR2927524/SRR2927524_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927540/SRR2927540_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/006/SRR2927526/SRR2927526_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927522/SRR2927522_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927521/SRR2927521_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927533/SRR2927533_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/007/SRR2927537/SRR2927537_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/005/SRR2927525/SRR2927525_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927543/SRR2927543_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/008/SRR2927528/SRR2927528_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927520/SRR2927520_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927532/SRR2927532_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/008/SRR2927538/SRR2927538_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927530/SRR2927530_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/007/SRR2927527/SRR2927527_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/009/SRR2927539/SRR2927539_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927531/SRR2927531_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/009/SRR2927529/SRR2927529_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/004/SRR2927524/SRR2927524_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/005/SRR2927525/SRR2927525_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/006/SRR2927526/SRR2927526_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927532/SRR2927532_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927543/SRR2927543_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927533/SRR2927533_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927531/SRR2927531_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/009/SRR2927529/SRR2927529_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/007/SRR2927527/SRR2927527_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927542/SRR2927542_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/004/SRR2927534/SRR2927534_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927530/SRR2927530_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/008/SRR2927528/SRR2927528_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/006/SRR2927536/SRR2927536_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927540/SRR2927540_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/005/SRR2927535/SRR2927535_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927541/SRR2927541_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/007/SRR2927537/SRR2927537_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927523/SRR2927523_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927522/SRR2927522_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/009/SRR2927539/SRR2927539_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927521/SRR2927521_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/008/SRR2927538/SRR2927538_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/000/SRR2927520/SRR2927520_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/002/SRR2927542/SRR2927542_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/004/SRR2927534/SRR2927534_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/003/SRR2927523/SRR2927523_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/005/SRR2927535/SRR2927535_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/001/SRR2927541/SRR2927541_2.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["West Virginia University"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA301204"],"scientific_name":["Saccharomyces cerevisiae"],"tag":["xref:PubMed:24532717","xref:PubMed:29208650"],"long_description":["In this study, we constructed three isogenic strains of S96 yrr1Δ background (its native YRR1 gene was knocked out) carrying three different YRR1 alleles, YRR1_S96, YRR1_YJM789, YRR1_S96-I775E, respectively. We then conducted chromatin immuno-precipitation followed by high-throughput sequencing (ChIP-Seq) for Yrr1 protein on the three strains grown in Yeast Peptone Dextrose medium (YPD) and YPD + 4NQO. Overall design: ChIP-Seq for Yrr1 protein was performed in biological triplicates on S96 cells carrying three different YRR1 alleles grown in YPD and YPD + 4NQO. Immune-precipitated DNA were sequenced for all the three cultures and input genomic DNA was sequenced for one culture."],"repository":["ENA"],"description_synonyms":["HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, ChIP-Chip, Chromatin Immuno-precipitation, Saccharomyces cerevisiae 'var. diastaticus', protein complex, Cross Linking and Immunoprecipitation Followed by Deep Sequencing, Proteins, Brewer's, ChIP Sequencing, Gene, baker's yeast, CLIP-Seq, protein, Assay for Transposase-Accessible Chromatin Using Sequencing, protein-containing complex, ChIP-PET, Saccharomyces italicus, Saccaromyces cerevisiae, Cell, ChIP-Exo, Baker's Yeasts, Sccharomyces cerevisiae, protein polypeptide chains, Allelomorphs., native protein, natural protein, polypeptide chain, Saccharomyces diastaticus, Protein, yeast, Chromatin Immunoprecipitation Sequencing-Chip, Gene Products, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, Carrying, protein aggregate, ChIA-PET, lager beer yeast, Saccharomyces oviformis, Chromatin Immunoprecipitation Sequencing Chip, Yeast, Chromatin Immuno precipitation Sequencing, ChIP, Chromatin Immunoprecipitation Paired End Tag, Chromatin Immuno Precipitation Paired End Tag, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, Chromatin Immunoprecipitation, Saccharomyes cerevisiae, Chromatin Immuno-precipitation Sequencing, proteins, Baker, ChIP Exonuclease, Saccharomyces uvarum var. melibiosus, ChIP-Seq, Sequencing, Assay for Transposase Accessible Chromatin Using Sequencing, S. cerevisiae, Chromatin Immunoprecipitation Paired-End Tag, Protein Gene Products, Allelomorph, Gene Proteins, Saccharomyces cerevisiae (Desm.) Meyen ex E.C. Hansen, S cerevisiae, Candida robusta, Saccharomyces capensis, Chromatin Immuno-Precipitation Paired-End Tag, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, Baker's, Allele, Mycoderma cerevisiae, 1883, Baker's Yeast, brewer's yeast, ChIP-Exonuclease, Brewer's Yeast, Baker Yeast"],"name_synonyms":["Saccharomyces oviformis, Yeast, lager beer yeast., Saccharomyces cerevisiae 'var. diastaticus', Brewer's, baker's yeast, Saccharomyes cerevisiae, Baker, Saccharomyces uvarum var. melibiosus, Saccharomyces italicus, Saccaromyces cerevisiae, S. cerevisiae, Baker's Yeasts, Sccharomyces cerevisiae, Saccharomyces cerevisiae (Desm.) Meyen ex E.C. Hansen, S cerevisiae, Candida robusta, Saccharomyces diastaticus, Saccharomyces capensis, yeast, Baker's, Mycoderma cerevisiae, 1883, Baker's Yeast, brewer's yeast, Brewer's Yeast, Baker Yeast"],"additional_accession":[]},"is_claimable":false,"name":"Saccharomyces cerevisiae","description":"ChIP-Seq for Yrr1 protein on Saccharomyces cerevisiae cells carrying different YRR1 alleles in response to 4-nitroquinoline-N-oxide (4NQO)","dates":{"last_updated":"2025-09-24","first_public":"2015-11-06"},"accession":"PRJNA301204","cross_references":{"GEO":["GSE74700"],"taxon":["4932"],"PubMed":["29208650","24532717"]}}