{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR318/000/SRR3180960/SRR3180960.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR318/001/SRR3180961/SRR3180961.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR318/009/SRR3180959/SRR3180959.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR318/002/SRR3180962/SRR3180962.fastq.gz"]},"type":"primary"},"statusCodeValue":200,"statusCode":"OK"}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Molecular Microbiology and Immunology, University of Southern California"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA312763"],"scientific_name":["Mus musculus"],"long_description":["TIC population plays a vital role for tumor recurrence and therapy resistnace. In this study, we identified the drug combination of ATRA and SAHA can specifically target TICs in vitro and in vivo. By conducting RNA sequencing and genome-wide transcriptome analysis, we comprehesively illustrate that the combination treatment epigenetically regulates TICs. Overall design: The TICs were treated with 5ug/ml of ATRA, 0.5ug/ml of SAHA or both for RNA sequencing by using Illumina HiSeq2500 system."],"repository":["ENA"],"name_synonyms":["Mus musculus, Laboratory Mice., House, Mus, Laboratory, Swiss, Mus domesticus, mouse, Mus musculus domesticus, Swiss Mouse, mouse <Mus musculus>, Mouse, House Mice, Swiss Mice, house mouse, Mice, Laboratory Mouse, House Mouse, mice C57BL/6xCBA/CaJ hybrid, domesticus, Mus muscaris"],"description_synonyms":["RNA Sequence Determination, Tretin M, tretinoin, Tic disorder, Refissa, Sequence Determination, Neoplasms, trans-Retinoic Acid, RNA Sequence, Benign Neoplasm, Vitamin A, Vocal Tic, stalk, Spasm, 8E-tetraenoic acid, Tumor, beta all trans Retinoic Acid, Malignant, 6-trimethyl-1-cyclohexen-1-yl)-2, AGN 100335, Potassium Salt, Retinoic Acid, Choreas, Motor, Cordes vas, Hydroxamic., Habituation Spasm, Gestural Tics, Scanning Transmission Electron Microscopy, 3, 4, Analysis, Habit Spasms, 6, Retin-A, primary stem, Vesanoid, Stieva-A, 6-trimethylcyclohex-1-en-1-yl)nona-2, Retinoic acid, Retinoic, Hydroxamic, all-trans-beta-Retinoic acid, Analyses, Malignancy, Determination, Renova, Salt, all trans Retinoic Acid, Atralin, Tretinoin Potassium Salt, Betarretin, 8E)-3, trans Retinoic Acid, Sequence Determinations, Transient, Sequencing, culm, Tretinoin Sodium Salt, 6-trimethyl-1-cyclohexenyl)nona-2, Neoplasias, beta-all-trans-Retinoic, Altreno, RNA Sequence Analyses, Motor Tic, Habit Choreas, Tic, Vocal Tics, Habit, RNA Sequencing, Malignancies, Habit Spasm, Vitamin A Acid, (2E, trans-Retinoic, Veltin, Sequence Analyses, Cancer, Tumors, all-trans-vitamin A1 acid, RNA, Chorea, Malignant Neoplasm, RNA Sequence Determinations, axis, Tretinoin Zinc Salt, 8-all-trans-tetraenoic acid, 4E, Scanning Transmission, Dermairol, Tretinoin Potassium, Ro 1-5488, Cell, Tri-luma, Determinations, Tretinoin, trans-retinoic acid, all-trans retinoic acid, Electron Microscopy, Motor Tics, all-trans-Retinoic Acid, 8-nonatetraenoic acid, Tretinoin Sodium, Benign, all-trans-vitamin A acid, Biacna, 6-trimethylcyclohex-1-enyl)nona-2, Retin A, Spasms, Neoplasm, retinoic acid, all-trans-tretinoin, all-trans-Retinoic, Hydroxamic Acid, 6-trimethyl-1-cyclohexene-1-yl)-2, Vocal, Acide retinoique (French), beta-Retinoic acid, Gestural Tic, Acid, tretinoina, Habit Chorea, Habituation, 6E, Tretinoin Zinc, Benign Neoplasms, beta-all-trans-Retinoic Acid, tretinoinum, Cancers, Transient Tics, 6-trimethylcyclohexen-1-yl)nona-2E, Habituation Spasms, Transient Tic, Malignant Neoplasms, Tics, Zinc Salt, Sodium Salt, 7-dimethyl-9-(2, all-(E)-retinoic acid, primary axis, Avita, RNA Sequence Analysis, STEM, vitamin A acid, Acids, Retisol-A, (all-E)-3, 8-tetraenoic acid, Gestural, other neoplasm, tretinoine, Neoplasia"],"additional_accession":[]},"is_claimable":false,"name":"Mus musculus","description":"RNA sequencing for tumor-initiating stem-like cells (TICs) treated with all-trans retinoic acid (ATRA) and suberoylanilide hydroxamic acid (SAHA)","dates":{"last_updated":"2025-09-24","first_public":"2020-01-03"},"accession":"PRJNA312763","cross_references":{"GEO":["GSE78139"],"taxon":["10090"]}}