{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/008/SRR3621888/SRR3621888.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/006/SRR3621886/SRR3621886.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/003/SRR3621883/SRR3621883.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/009/SRR3621879/SRR3621879.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/005/SRR3621885/SRR3621885.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/007/SRR3621877/SRR3621877.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/000/SRR3621880/SRR3621880.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/006/SRR3621876/SRR3621876.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/007/SRR3621887/SRR3621887.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/002/SRR3621882/SRR3621882.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/004/SRR3621884/SRR3621884.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/001/SRR3621881/SRR3621881.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/008/SRR3621878/SRR3621878.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR362/009/SRR3621889/SRR3621889.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Dr. Noah Shroyer's lab, Baylor College of Medicine"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA324267"],"scientific_name":["Mus musculus"],"tag":["xref:PubMed:28174757"],"long_description":["We identify targets of ATOH1 binding in the adult intestinal epithelium. Overall design: Ileal or colonic crypts were isolated from 10~12 week old adult Atoh1GFP/GFP mice (which express a functional ATOH1::GFP protein and are phenotypically normal) followed by ATOH1, H3K27Ac and H3K27me3 ChIP-Seq."],"repository":["ENA"],"description_synonyms":["T-cell leukemia, ChIP-Chip, Materials, Chromatin Immuno-precipitation, adult stage, AGL4, Gene, CLIP-Seq, broad, SEPALLATA 2, Assay for Transposase-Accessible Chromatin Using Sequencing, Transcription Factor, Small, zinc ion regulated core promoter proximal region sequence-specific DNA binding, Taenia Coli, RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity, Appendix, Chromatin Immunoprecipitation Sequencing-Chip, small intestine, adult, ATH1, Chromatin Immunoprecipitation Sequencing Chip, Transcription, Omental Appendix, mid intestine, Chromatin Immuno precipitation Sequencing, Genetic, Genomes, ChIP, Chromatin Immunoprecipitation Paired End Tag, Chromatin Immuno Precipitation Paired End Tag, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, F10N7_150, posterior intestine, RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity, Sequencing, Chromatin Immunoprecipitation Paired-End Tag, Intestines, Math1, anterior intestine, RNA polymerase II proximal promoter sequence-specific DNA binding, copper ion regulated proximal promoter sequence-specific DNA binding, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, AGAMOUS-like 4, zinc ion regulated proximal promoter sequence-specific DNA binding, sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity, TRANSCRIPTION FACTOR, RNA polymerase II distal enhancer sequence-specific binding, Small Intestine, HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, RNA polymerase II core promoter proximal region sequence-specific binding, wide/broad, MATH-1, Cross Linking and Immunoprecipitation Followed by Deep Sequencing, ChIP Sequencing, zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity, homeobox 1, Factor, metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity, Cistrons, Appendix Epiploica, ChIP-PET, RGD1565171, hindgut, ChIP-Exo, Hath1, transcription factor activity, large bowel, RNA polymerase II transcription factor activity, HATH1, bHLHa14, Genetic Materials, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, sequence-specific distal enhancer binding RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity, Adults, Omental Appendices, KNOTTED1-like homeobox gene 5, Genetic Material, F14P3.4, Factors, F14P3_4, Small Intestines, Appendices, Chromatin Immunoprecipitation, Chromatin Immuno-precipitation Sequencing, whole genome, Omental, ChIP Exonuclease, metal ion regulated core promoter proximal region sequence-specific binding, copper ion regulated core promoter proximal region sequence-specific binding, small bowel, ChIP-Seq, Transcription factor, F10N7.150, Assay for Transposase Accessible Chromatin Using Sequencing, intestinum tenue, wide, Material, COLON, ChIA-PET., Chromatin Immuno-Precipitation Paired-End Tag, copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity, Cistron, metal ion regulated sequence-specific DNA binding, ChIP-Exonuclease, metal ion regulated proximal promoter sequence-specific DNA binding"],"name_synonyms":["Mus musculus, Laboratory Mice., House, Mus, Laboratory, Swiss, Mus domesticus, mouse, Mus musculus domesticus, Swiss Mouse, mouse <Mus musculus>, Mouse, House Mice, Swiss Mice, house mouse, Mice, Laboratory Mouse, House Mouse, mice C57BL/6xCBA/CaJ hybrid, domesticus, Mus muscaris"],"additional_accession":[]},"is_claimable":false,"name":"Mus musculus","description":"Genome-wide identification of transcription factor ATOH1 target genes in adult small intestine and colon (ChIP-Seq)","dates":{"last_updated":"2025-09-24","first_public":"2017-04-19"},"accession":"PRJNA324267","cross_references":{"GEO":["GSE82181"],"taxon":["10090"],"PubMed":["28174757"]}}