<HashMap><database>ENA</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/007/SRR6677397/SRR6677397.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/006/SRR6677396/SRR6677396.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/002/SRR6677392/SRR6677392.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/003/SRR6677393/SRR6677393.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/001/SRR6677391/SRR6677391.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/005/SRR6677395/SRR6677395.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/004/SRR6677394/SRR6677394.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR667/000/SRR6677390/SRR6677390.fastq.gz</Fastqsanger.gz></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Genomics</omics_type><center_name>Magnuson, Genetics, University of North Carolina at Chapel Hill</center_name><full_dataset_link>https://www.ebi.ac.uk/ena/browser/view/PRJNA433181</full_dataset_link><scientific_name>Mus musculus</scientific_name><long_description>Obesity in humans is associated with worsened health outcomes following infections compared to non-obese individuals. Here, we examined the effects of adipose tissue and obesity on T cell responses to virus infection in mice. Lymphocytic choriomeningitis virus (LCMV) grew to high titer in adipose tissue. Virus-specific T cells enter the adipose tissue to resolve infection but then remain as a memory population distinct from memory T cells in lymphoid tissues. Memory CD4+ and CD8+ T cells residing in adipose were abundant, accounting for roughly 10% of all virus-specific memory T cells. Diet-induced obesity increased memory T cell number in adipose and spleen. Upon re-challenge infection, memory T cells caused severe pathogenesis, leading to sharply increased lipase levels, calcification of adipose tissue, pancreatitis, and reduced survival in obese mice but not lean mice. Thus, obesity leads to a unique form of viral pathogenesis involving memory T cell-dependent adipocyte destruction and collateral damage to other tissues. Overall design: RNA-seq comparison of CD4+ T cells in spleen vs fat (with 10 mice pooled per replicate) and CD8+ T cells in spleen vs fat (with 5 mice pooled per replicate)</long_description><tag>xref:PubMed:30970254</tag><repository>ENA</repository></additional><is_claimable>false</is_claimable><name>Obesity expands a distinct population of adipose-resident T cells and increases vulnerability to infection</name><description>Obesity expands a distinct population of adipose-resident T cells and increases vulnerability to infection</description><dates><last_updated>2025-09-24</last_updated><first_public>2019-03-21</first_public></dates><accession>PRJNA433181</accession><cross_references><GEO>GSE110212</GEO><taxon>10090</taxon><PubMed>30970254</PubMed></cross_references></HashMap>