<HashMap><database>ENA</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/008/SRR8558688/SRR8558688_1.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/008/SRR8558688/SRR8558688_2.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/008/SRR8558688/SRR8558688.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/007/SRR8558687/SRR8558687_2.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/007/SRR8558687/SRR8558687.fastq.gz</Fastqsanger.gz><Fastqsanger.gz>ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR855/007/SRR8558687/SRR8558687_1.fastq.gz</Fastqsanger.gz></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><omics_type>Genomics</omics_type><center_name>Rhelixa, Inc.</center_name><full_dataset_link>https://www.ebi.ac.uk/ena/browser/view/PRJNA521784</full_dataset_link><scientific_name>Mus musculus</scientific_name><long_description>Effective anti-cancer immunity is associated with the presence of T cells directed at potentially immunogenic tumor neoantigens arising from tumor-specific mutation. We confirmed the expression of reported MC38 neoantigens (Nature 515: 572, 2014). MC38 cells in our laboratory had the same point mutation at amino acid position 299 in Adpgk (ASMTN[R/M]ELM), but did not have a point mutation at amino acid position 42 in Reps1 (AQL[P/A]NDVVL). The allele frequency of mutated Adpgk (ASMTNMELM) was 30%. Overall design: Total RNASeq reads covering the variant position for 2 genes corresponding to the previously reported neoepitope peptides. Only bam files were generated to compare the allele imbalance among samples and made available as SRA records.</long_description><repository>ENA</repository><name_synonyms>RbBP-35, RALBP1, Imbalance, 2610017G09Rik., 2.7.1.147, ADPGK, Abnormal retropulsion test, C77577, BB161292, ADP-GK, RGD1306103, Adp-gk</name_synonyms><description_synonyms>RbBP-35, RALBP1, Imbalance, 2610017G09Rik., 2.7.1.147, ADPGK, Abnormal retropulsion test, C77577, BB161292, ADP-GK, RGD1306103, Adp-gk</description_synonyms></additional><is_claimable>false</is_claimable><name>Allele imbalance in Reps1 and Adpgk</name><description>Allele imbalance in Reps1 and Adpgk</description><dates><last_updated>2025-09-24</last_updated><first_public>2019-02-14</first_public></dates><accession>PRJNA521784</accession><cross_references><GEO>GSE126280</GEO><taxon>10090</taxon></cross_references></HashMap>