{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR968/001/SRR9685281/SRR9685281_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR968/001/SRR9685281/SRR9685281_1.fastq.gz"]},"type":"primary"},"statusCodeValue":200,"statusCode":"OK"}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["IMB Mainz"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA554660"],"long_description":["By proteotranscriptomics, combining in-depth transcriptome sequencing and high resolution mass spectrometry, we establish protein evidence for more than 6000 genes. Our approach shows a precision rate of 96% in terms of annotated and detected protein-coding genes. We additionally experimentally classify the localization of several thousand proteins using the recently published LOPIT-DC workflow⁠ providing not only accurate gene models for the protein-coding genes, but also the subcellular localization of their proteins by spatial proteomics. Overall, we provide herea proof of concept for the generation of species-, strain- and cell-line-specific gene annotation for protein-coding genes based on experimental evidence without the need of a sequenced genome."],"repository":["ENA"],"additional_accession":[]},"is_claimable":false,"name":"","description":"Proteotranscriptomics assisted gene annotation of Bombyx mori","dates":{"last_updated":"2023-05-19","first_public":"2020-08-15"},"accession":"PRJNA554660","cross_references":{}}