{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/090/SRR12152390/SRR12152390_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/087/SRR12152387/SRR12152387_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/089/SRR12152389/SRR12152389_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/088/SRR12152388/SRR12152388_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/090/SRR12152390/SRR12152390_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/089/SRR12152389/SRR12152389_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/087/SRR12152387/SRR12152387_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/088/SRR12152388/SRR12152388_2.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Shanghai Institute of Materia Medica Chinese Academy Sciences"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA644345"],"scientific_name":["Pseudomonas aeruginosa"],"long_description":["we performed ChIP-seq assays to identify in vivo targets of GltR. The plasmid mini-gltR-flag-lacz was constructed and the resultant plasmid was fused to P. aeruginosa strain PAO1, yielding PAO1/mini-gltR-flag-lacz. We investigated GltR-binding to the chromosome of PAO1 during growth with glucose by ChIP-Seq. Sequence reads obtained from three independent ChIP-Seq experiments using anti-flag antibody and mapped to the P. aeruginosa PAO1 genome.Using the MACS software,we identified 55 enriched loci (q-value  3-fold, but were absent in control sample conducted without anti-flag antibody. Overall design: Perform a genome-wide screen for GltR binding sites."],"tag":["pathogen:priority","pathogen:bacterium","pathogen","xref:PubMed:33670077"],"classification":["bacteria"],"repository":["ENA"],"description_synonyms":["HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, Chromatin Immunoprecipitation Sequencing Chip, ChIP-Chip, Chromatin Immuno precipitation Sequencing, Chromatin Immuno-precipitation, determination, ChIP, Chromatin Immunoprecipitation Paired End Tag, Cross Linking and Immunoprecipitation Followed by Deep Sequencing, Chromatin Immuno Precipitation Paired End Tag, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, ChIP Sequencing, Chromatin Immunoprecipitation, CLIP-Seq, Chromatin Immuno-precipitation Sequencing, whole genome, Assay for Transposase-Accessible Chromatin Using Sequencing, ChIP Exonuclease, ChIP-PET, ChIP-Seq, Sequencing, ChIP-Exo, Assay for Transposase Accessible Chromatin Using Sequencing, Chromatin Immunoprecipitation Paired-End Tag, Chromatin Immuno-Precipitation Paired-End Tag, chemical analysis, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, Chromatin Immunoprecipitation Sequencing-Chip, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, assay, ChIP-Exonuclease, ChIA-PET, Genomes."],"name_synonyms":["HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, Chromatin Immunoprecipitation Sequencing Chip, ChIP-Chip, Chromatin Immuno precipitation Sequencing, Chromatin Immuno-precipitation, determination, ChIP, Chromatin Immunoprecipitation Paired End Tag, Cross Linking and Immunoprecipitation Followed by Deep Sequencing, Chromatin Immuno Precipitation Paired End Tag, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, ChIP Sequencing, Chromatin Immunoprecipitation, CLIP-Seq, Chromatin Immuno-precipitation Sequencing, whole genome, Assay for Transposase-Accessible Chromatin Using Sequencing, ChIP Exonuclease, ChIP-PET, ChIP-Seq, Sequencing, ChIP-Exo, Assay for Transposase Accessible Chromatin Using Sequencing, Chromatin Immunoprecipitation Paired-End Tag, Chromatin Immuno-Precipitation Paired-End Tag, chemical analysis, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, Chromatin Immunoprecipitation Sequencing-Chip, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, assay, ChIP-Exonuclease, ChIA-PET, Genomes."],"additional_accession":[]},"is_claimable":false,"name":"ChIP-seq analysis reveals the direct targets of GltR in the P. aeruginosa genome","description":"ChIP-seq analysis reveals the direct targets of GltR in the P. aeruginosa genome","dates":{"last_updated":"2025-09-24","first_public":"2021-02-25"},"accession":"PRJNA644345","cross_references":{"GEO":["GSE153848"],"taxon":["287"],"PubMed":["33670077"]}}