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Knockdown of EGFP was carried out as a control. By comparing all four knockdowns, we observed misregulation of a highly-overlapping set of genes, indicating that they regulate mRNA levels through a shared pathway. Overall design: mRNA profiles of knockdowns of 4 Ddx genes, with EGFP knockdown as control, all performed with three biological replicates"],"repository":["ENA"],"description_synonyms":["Embryonic, Modification, Gene., RNA, Post Transcriptional RNA Processing, Gene Expressions, Posttranscriptional, Embryonic Stem Cell, RNA Processing, Processing, Proteins, Stem Cells, Modifications, Post-Transcriptional RNA Modification, Gene, Post Transcriptional RNA Modification, Expressions, Cell, Protein Gene Products, Gene Proteins, Post-Transcriptional RNA Modifications, Posttranscriptional RNA, Post-Transcriptional, Stem Cell, RNA Modifications, Protein, Cells, Gene Products, Post Transcriptional, Post-Transcriptional RNA, Expression, RNA Modification, Post-Transcriptional RNA Processing, Embryonic Stem, Posttranscriptional RNA Processing"],"name_synonyms":["Embryonic, Modification, Gene., RNA, Post Transcriptional RNA Processing, Gene Expressions, Posttranscriptional, Embryonic Stem Cell, RNA Processing, Processing, Proteins, Stem Cells, Modifications, Post-Transcriptional RNA Modification, Gene, Post Transcriptional RNA Modification, Expressions, Cell, Protein Gene Products, Gene Proteins, Post-Transcriptional RNA Modifications, Posttranscriptional RNA, Post-Transcriptional, Stem Cell, RNA Modifications, Protein, Cells, Gene Products, Post Transcriptional, Post-Transcriptional RNA, Expression, RNA Modification, Post-Transcriptional RNA Processing, Embryonic Stem, Posttranscriptional RNA Processing"],"additional_accession":[]},"is_claimable":false,"name":"Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression","description":"Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression","dates":{"last_updated":"2025-09-24","first_public":"2021-08-29"},"accession":"PRJNA679790","cross_references":{"GEO":["GSE161890"],"taxon":["10090"],"PubMed":["34478875"]}}