{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/073/SRR15413373/SRR15413373_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/069/SRR15413369/SRR15413369_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/087/SRR15413387/SRR15413387_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/093/SRR18268593/SRR18268593_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/075/SRR15413375/SRR15413375_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/094/SRR18268594/SRR18268594_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/074/SRR15413374/SRR15413374_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/084/SRR15413384/SRR15413384_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/086/SRR15413386/SRR15413386_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/072/SRR15413372/SRR15413372_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/076/SRR15413376/SRR15413376_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/093/SRR18268593/SRR18268593_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/067/SRR15413367/SRR15413367_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/095/SRR18268595/SRR18268595_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/094/SRR18268594/SRR18268594_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/097/SRR18268597/SRR18268597_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/070/SRR15413370/SRR15413370_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/092/SRR18268592/SRR18268592_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/071/SRR15413371/SRR15413371_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/065/SRR15413365/SRR15413365_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/074/SRR15413374/SRR15413374_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/068/SRR15413368/SRR15413368_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/077/SRR15413377/SRR15413377_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/079/SRR15413379/SRR15413379_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/076/SRR15413376/SRR15413376_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/086/SRR15413386/SRR15413386_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/085/SRR15413385/SRR15413385_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/083/SRR15413383/SRR15413383_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/080/SRR15413380/SRR15413380_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/082/SRR15413382/SRR15413382_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/097/SRR18268597/SRR18268597_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/081/SRR15413381/SRR15413381_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/079/SRR15413379/SRR15413379_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/095/SRR18268595/SRR18268595_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/077/SRR15413377/SRR15413377_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/078/SRR15413378/SRR15413378_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/066/SRR15413366/SRR15413366_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/065/SRR15413365/SRR15413365_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/066/SRR15413366/SRR15413366_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/080/SRR15413380/SRR15413380_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/084/SRR15413384/SRR15413384_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/082/SRR15413382/SRR15413382_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/078/SRR15413378/SRR15413378_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/070/SRR15413370/SRR15413370_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/096/SRR18268596/SRR18268596_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/067/SRR15413367/SRR15413367_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/071/SRR15413371/SRR15413371_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/085/SRR15413385/SRR15413385_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/083/SRR15413383/SRR15413383_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/075/SRR15413375/SRR15413375_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/073/SRR15413373/SRR15413373_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/072/SRR15413372/SRR15413372_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/081/SRR15413381/SRR15413381_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/087/SRR15413387/SRR15413387_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/069/SRR15413369/SRR15413369_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR154/068/SRR15413368/SRR15413368_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/096/SRR18268596/SRR18268596_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR182/092/SRR18268592/SRR18268592_1.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Health Science Center, Shenzhen University"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA753710"],"scientific_name":["Homo sapiens"],"long_description":["Znic finger proteins play crucial roles in development and disease, including tumorigenesis. Here, we identifed ZNF280C as a novel oncogenic driver in colorectal cancer, and systematically studied the molecular mechanisms underlying ZNF280C-mediated malignant transformation and progression. Overall design: RKO colon cancer cells stably expressing a ZNF280C-targeting shRNA controlled by a tetracycline-inducible promoter were treated with or without 1 ug/ml doxycycline for 72 hours, and the cells were harvested for analysis as described below. For transgenic mice experiments, Zfp280c knock-out or wild-type C57BL/6J mice were sacrificed at 12 weeks of age and colon tissues were havested for transriptomic analysis as described below."],"tag":["xref:PubMed:35605119"],"repository":["ENA"],"additional_accession":[]},"is_claimable":false,"name":"Epigenomic and transcriptomic features induced by silencing of ZNF280C in colon cancer cells and knock-out of Zfp280c in mice [ChIP-Seq, ATAC-Seq]","description":"Epigenomic and transcriptomic features induced by silencing of ZNF280C in colon cancer cells and knock-out of Zfp280c in mice [ChIP-Seq, ATAC-Seq]","dates":{"last_updated":"2025-09-24","first_public":"2022-05-22"},"accession":"PRJNA753710","cross_references":{"GEO":["GSE181855"],"taxon":["9606"],"PubMed":["35605119"]}}