ENAapplication/xmlftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/023/SRR16355523/SRR16355523_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/015/SRR16355515/SRR16355515_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/019/SRR16355519/SRR16355519_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/034/SRR16355534/SRR16355534_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/035/SRR16355535/SRR16355535_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/026/SRR16355526/SRR16355526_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/027/SRR16355527/SRR16355527_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/022/SRR16355522/SRR16355522_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/025/SRR16355525/SRR16355525_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/022/SRR16355522/SRR16355522_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/016/SRR16355516/SRR16355516_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/015/SRR16355515/SRR16355515_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/021/SRR16355521/SRR16355521_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/024/SRR16355524/SRR16355524_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/018/SRR16355518/SRR16355518_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/028/SRR16355528/SRR16355528_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/027/SRR16355527/SRR16355527_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/034/SRR16355534/SRR16355534_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/033/SRR16355533/SRR16355533_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/030/SRR16355530/SRR16355530_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/031/SRR16355531/SRR16355531_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/025/SRR16355525/SRR16355525_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/033/SRR16355533/SRR16355533_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/021/SRR16355521/SRR16355521_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/031/SRR16355531/SRR16355531_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/032/SRR16355532/SRR16355532_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/028/SRR16355528/SRR16355528_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/029/SRR16355529/SRR16355529_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/019/SRR16355519/SRR16355519_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/017/SRR16355517/SRR16355517_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/016/SRR16355516/SRR16355516_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/030/SRR16355530/SRR16355530_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/018/SRR16355518/SRR16355518_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/032/SRR16355532/SRR16355532_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/020/SRR16355520/SRR16355520_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/026/SRR16355526/SRR16355526_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/029/SRR16355529/SRR16355529_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/035/SRR16355535/SRR16355535_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/023/SRR16355523/SRR16355523_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/020/SRR16355520/SRR16355520_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/024/SRR16355524/SRR16355524_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR163/017/SRR16355517/SRR16355517_1.fastq.gzprimaryOK200GenomicsBeijing Forestry Universityhttps://www.ebi.ac.uk/ena/browser/view/PRJNA771662Pinus tabuliformisIn plants, ultraviolet (UV)-light is an important driver for their growth and natural distribution and is also a valuable tool for manipulating their productivity as well as their biotic interactions. Understanding plant responses to different UV radiation is sparse, especially from a systems biology perspective and particularly for conifers. Here, we evaluated the physiological and transcriptomic responses to the short-term application of high-irradiance UV-B and UV-C waves on Pinus tabuliformis Carr., a major conifer in Northern China. By undertaking time-ordered gene co-expression network analyses and network comparisons incorporating physiological traits and gene expression variation, we uncovered communalities but also differences in P. tabuliformis responses to UV-B and UV-C. Both types of spectral bands caused a significant inhibition of photosynthesis and conversely improvement of antioxidant capacity, flavonoid production and signaling pathways related to stress resistance, indicating a clear switch from predominantly primary metabolism to enhanced defensive metabolism in pine. We isolated distinct subnetworks for photoreceptor-mediated signal transduction, maximum quantum efficiency of photosystem II (Fv/Fm) regulation and flavonoid biosynthesis in response to UV-B and UV-C irradiation. From these subnetworks, we further identified phototropins as potential important elements in both UV-B and UV-C signaling and, for the first time, reveal peptide hormones possibly involved in promoting flavonoid biosynthesis against UV-B, while these hormones seem not to be implicated in defense against UV-C exposure. The present study employed an effective strategy for disentangling the complex physiological and genetic regulatory mechanisms in a non-model plant species, and thus, provides a suitable reference for future functional evaluations and artificial UV-light mediated growing strategies in plant production. Overall design: Pinus tabuliformis Raw sequence reads from UV-B and UV-C irradiation experimentENAfalseUV-B and UV-C irradiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr.UV-B and UV-C irradiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr.2025-09-242022-10-11PRJNA771662GSE18598788731