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The rapid and accurate microbiological detection of the MTBC is crucial for the diagnosis and treatment of TB. Metagenomic next-generation sequencing (mNGS) has been shown to be a promising and satisfying application of detection in infectious diseases. However, relevant research about the difference in MTBC detection by mNGS between bronchoalveolar lavage fluid (BALF) and lung biopsy tissue specimens remains scarce. This study demonstrates that mNGS could offer an effective detection method of MTBC in BALF or lung tissue biopsy samples in patients suspected of TB infections. When it comes to the situations that BALF samples have limited value to catch pathogens for special lesion sites or the patients have contraindications to bronchoalveolar lavage (BAL) procedures, lung biopsy tissue is an optional specimen for MTBC detection by mNGS. However, whether lung tissue-mNGS is superior to BALF-mNGS in patients with MTBC infection requires further prospective multicenter randomized controlled studies with more cases.</long_description><tag>pathogen:priority</tag><tag>pathogen:bacterium</tag><tag>pathogen</tag><classification>bacteria</classification><repository>ENA</repository></additional><is_claimable>false</is_claimable><name>Mycobacterium tuberculosis complex sp.</name><description>The Diagnosis Performance of Mycobacterium Tuberculosis Complex by Metagenomic Next-generation Sequencing on Bronchoalveolar Lavage Fluid and Lung Biopsy Tissue: A Cross-sectional Analysis</description><dates><last_updated>2025-09-24</last_updated><first_public>2021-12-02</first_public></dates><accession>PRJNA784757</accession><cross_references><taxon>1494075</taxon></cross_references></HashMap>