{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Other":["ftp://"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Siwei Feng"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA831569"],"scientific_name":["Mus musculus"],"long_description":["We found that several autophagy genes in myeloid cells are required to protect against high-dose Mtb (~1000cfu) infection. To understand the immune cell population in these mice after high-dose Mtb infection and what may contribute to the susceptibility, we did scRNAseq on naïve mice and mice infected with high-dose of Mtb strain Erdman. Overall design: Lung cells from naive Atg14f/f,Atg14f/f-CD11c-cre, Atg14f/f-LysM-cre and 21dpi Atg14f/f,Atg14f/f-CD11c-cre, Atg14f/f-LysM-cre mice. Cells pooled from 4 mice each, age 8-10 wks."],"repository":["ENA"],"description_synonyms":["Lyzs, 3.4.22.-, Lzp, Cr4, pulmo, Laboratory, CD11c, AI449405, AI326280, Mus domesticus, CASP14, mouse, scRNA-seq, lung parenchyma, mini-ICE, CASP-14, ITGAX, 95, House Mouse, Cell, single cell RNA sequencing, single-cell transcriptome sequencing, single-cell RNA-seq, House, Mus, parenchyma of lung, Mini-ICE, lung, Mus musculus domesticus, Lzm-s1, neoplasm, Mice, 95 alpha chain, neoplasms, Mus musculus., Mus musculus, Caspase-14 subunit p10, Swiss, mice, Swiss Mouse, Leukocyte adhesion glycoprotein p150, House Mice, Swiss Mice, Caspase-14 subunit p19, Leu M5, MICE, leukocyte adhesion glycoprotein p150, Laboratory Mice, domesticus, Lysm, Lys, pulmonary, N418, CD11 antigen-like family member C, leukocyte adhesion receptor p150, CD11C, Leukocyte adhesion receptor p150, Lungs, Mouse, SLEB6, Laboratory Mouse, Cd11c, Lzm"],"name_synonyms":["Lyzs, 3.4.22.-, Lzp, Cr4, pulmo, Laboratory, CD11c, AI449405, AI326280, Mus domesticus, CASP14, mouse, scRNA-seq, lung parenchyma, mini-ICE, CASP-14, ITGAX, 95, House Mouse, Cell, single cell RNA sequencing, single-cell transcriptome sequencing, single-cell RNA-seq, House, Mus, parenchyma of lung, Mini-ICE, lung, Mus musculus domesticus, Lzm-s1, neoplasm, Mice, 95 alpha chain, neoplasms, Mus musculus., Mus musculus, Caspase-14 subunit p10, Swiss, mice, Swiss Mouse, Leukocyte adhesion glycoprotein p150, House Mice, Swiss Mice, Caspase-14 subunit p19, Leu M5, MICE, leukocyte adhesion glycoprotein p150, Laboratory Mice, domesticus, Lysm, Lys, pulmonary, N418, CD11 antigen-like family member C, leukocyte adhesion receptor p150, CD11C, Leukocyte adhesion receptor p150, Lungs, Mouse, SLEB6, Laboratory Mouse, Cd11c, Lzm"],"additional_accession":[]},"is_claimable":false,"name":"Single-cell RNA sequencing of total lung cells from Atg14f/f,Atg14f/f-CD11c-cre, Atg14f/f-LysM-cre mice","description":"Single-cell RNA sequencing of total lung cells from Atg14f/f,Atg14f/f-CD11c-cre, Atg14f/f-LysM-cre mice","dates":{"last_updated":"2025-09-24","first_public":"2022-04-26"},"accession":"PRJNA831569","cross_references":{"GEO":["GSE201410"],"taxon":["10090"]}}