{"database":"ENA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Fastqsanger.gz":["ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/021/SRR28424821/SRR28424821_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/020/SRR28424820/SRR28424820_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/021/SRR28424821/SRR28424821_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/022/SRR28424822/SRR28424822_2.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/022/SRR28424822/SRR28424822_1.fastq.gz","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR284/020/SRR28424820/SRR28424820_2.fastq.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":null,"additional":{"omics_type":["Genomics"],"center_name":["Cincinnati Children's Hospital Medical Center"],"full_dataset_link":["https://www.ebi.ac.uk/ena/browser/view/PRJNA897893"],"scientific_name":["Mus musculus"],"tag":["xref:PubMed:38898031"],"long_description":["Foxf1 is enriched and differentially expressed in lung cells derived from mesoderm. We used single cell RNA sequencing (snRNAseq + snATAC) to analyze the dynamic transcriptional regulation in various lung cell types. The single cell analysis show the cell specific regulation of Foxf1 by distal enhancers that contribute to the molecular pathology of ACDMPV. Overall design: Foxf1 positive cells from lung of mice were isolated by Fluorescence-activated cell sorting (FACS) according to the presence or absence of GFP signal and analyzed using 10X multiome-seq. The cells derived from mESC cells via blastocyst complementation are processed and analysed by single cell RNA sequencing."],"repository":["ENA"],"description_synonyms":["fkhl5, Endothelial Cells, d230, Laboratory, Mus domesticus, freac1, dTAFII250, Capillary, EfW1, House Mouse, Vascular Endothelial, SCM-1-alpha, dmTAF[[II]]230, HFH-8, Lymphatic, dmTAF1, House, Taf230, Vascular, Cytokine SCM-1, lung, FKHL5, Mus musculus domesticus, Lymphatic Endothelial Cell, Scyc1, Lptn, Mice, neoplasm, TAF250, Vascular Endothelial Cells, Taf200, dTAF[[II]]250, TFIID TAF250, cel, foxf1, Vascular Endothelial Cell, cell, Hfh8, Swiss, Taf1p, Swiss Mice, SCM-1a, acdmpv, C motif chemokine 1, Lymphatic Endothelial Cells, SCM1A, parenchyma of lung., dTAF250, Capillary Endothelial, Capillary Endothelial Cell, house mouse, TAF, Small-inducible cytokine C1, dTAF[[II]]230, TAF[[II]]250, Freac-1, xfd-13, pulmo, Capillary Endothelial Cells, ATAC, mouse, TAF200, lung parenchyma, l(3)84Ab, BG:DS00004.13, TAFII-250, TAF250/230, Lymphotaxin, Cell, mice C57BL/6xCBA/CaJ hybrid, Mus muscaris, dTAF230, FREAC1, TAFII250, SCYC1, Mus, p230, XC chemokine ligand 1, TAF[[II]]250/230, TFIID, neoplasms, Taf[[II]]250, Mus musculus, LTN, TAF[[II]]230, ACDMPV, mice, AI661682, SCM-1, Swiss Mouse, House Mice, TAF[II]250, Endothelial, CG17603, TAF[[II]], LPTN, domesticus, Laboratory Mice, Foxf1a, Lymphatic Endothelial, DmelCG17603, AI450827, Taf250, pulmonary, SR3-5, Endothelial Cell, Cells, SCM1, Mouse, Lungs, Laboratory Mouse, TAF230, TAF1"],"name_synonyms":["fkhl5, Endothelial Cells, d230, Laboratory, Mus domesticus, freac1, dTAFII250, Capillary, EfW1, House Mouse, Vascular Endothelial, SCM-1-alpha, dmTAF[[II]]230, HFH-8, Lymphatic, dmTAF1, House, Taf230, Vascular, Cytokine SCM-1, lung, FKHL5, Mus musculus domesticus, Lymphatic Endothelial Cell, Scyc1, Lptn, Mice, neoplasm, TAF250, Vascular Endothelial Cells, Taf200, dTAF[[II]]250, TFIID TAF250, cel, foxf1, Vascular Endothelial Cell, cell, Hfh8, Swiss, Taf1p, Swiss Mice, SCM-1a, acdmpv, C motif chemokine 1, Lymphatic Endothelial Cells, SCM1A, parenchyma of lung., dTAF250, Capillary Endothelial, Capillary Endothelial Cell, house mouse, TAF, Small-inducible cytokine C1, dTAF[[II]]230, TAF[[II]]250, Freac-1, xfd-13, pulmo, Capillary Endothelial Cells, ATAC, mouse, TAF200, lung parenchyma, l(3)84Ab, BG:DS00004.13, TAFII-250, TAF250/230, Lymphotaxin, Cell, mice C57BL/6xCBA/CaJ hybrid, Mus muscaris, dTAF230, FREAC1, TAFII250, SCYC1, Mus, p230, XC chemokine ligand 1, TAF[[II]]250/230, TFIID, neoplasms, Taf[[II]]250, Mus musculus, LTN, TAF[[II]]230, ACDMPV, mice, AI661682, SCM-1, Swiss Mouse, House Mice, TAF[II]250, Endothelial, CG17603, TAF[[II]], LPTN, domesticus, Laboratory Mice, Foxf1a, Lymphatic Endothelial, DmelCG17603, AI450827, Taf250, pulmonary, SR3-5, Endothelial Cell, Cells, SCM1, Mouse, Lungs, Laboratory Mouse, TAF230, TAF1"],"additional_accession":[]},"is_claimable":false,"name":"Multiome (GEX + ATAC) profile at single cell level of Foxf1 positive endothelial cells and mesenchymal cells from mouse lung at E18.5","description":"Multiome (GEX + ATAC) profile at single cell level of Foxf1 positive endothelial cells and mesenchymal cells from mouse lung at E18.5","dates":{"last_updated":"2025-09-24","first_public":"2024-04-02"},"accession":"PRJNA897893","cross_references":{"GEO":["GSE217194"],"taxon":["10090"],"PubMed":["38898031"]}}