ENAapplication/xmlftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/049/SRR23268649/SRR23268649_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/051/SRR23268651/SRR23268651_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/053/SRR23268653/SRR23268653_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/035/SRR23268635/SRR23268635_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/041/SRR23268641/SRR23268641_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/047/SRR23268647/SRR23268647_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/059/SRR23268659/SRR23268659_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/034/SRR23268634/SRR23268634_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/048/SRR23268648/SRR23268648_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/038/SRR23268638/SRR23268638_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/052/SRR23268652/SRR23268652_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/036/SRR23268636/SRR23268636_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/040/SRR23268640/SRR23268640_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/046/SRR23268646/SRR23268646_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/058/SRR23268658/SRR23268658_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/059/SRR23268659/SRR23268659_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/041/SRR23268641/SRR23268641_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/037/SRR23268637/SRR23268637_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/039/SRR23268639/SRR23268639_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/049/SRR23268649/SRR23268649_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/047/SRR23268647/SRR23268647_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/035/SRR23268635/SRR23268635_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/042/SRR23268642/SRR23268642_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/050/SRR23268650/SRR23268650_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/051/SRR23268651/SRR23268651_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/053/SRR23268653/SRR23268653_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/054/SRR23268654/SRR23268654_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/043/SRR23268643/SRR23268643_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/033/SRR23268633/SRR23268633_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/045/SRR23268645/SRR23268645_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/044/SRR23268644/SRR23268644_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/060/SRR23268660/SRR23268660_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/057/SRR23268657/SRR23268657_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/056/SRR23268656/SRR23268656_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/056/SRR23268656/SRR23268656_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/038/SRR23268638/SRR23268638_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/044/SRR23268644/SRR23268644_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/050/SRR23268650/SRR23268650_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/055/SRR23268655/SRR23268655_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/055/SRR23268655/SRR23268655_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/058/SRR23268658/SRR23268658_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/052/SRR23268652/SRR23268652_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/060/SRR23268660/SRR23268660_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/057/SRR23268657/SRR23268657_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/040/SRR23268640/SRR23268640_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/054/SRR23268654/SRR23268654_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/048/SRR23268648/SRR23268648_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/046/SRR23268646/SRR23268646_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/045/SRR23268645/SRR23268645_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/043/SRR23268643/SRR23268643_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/042/SRR23268642/SRR23268642_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/034/SRR23268634/SRR23268634_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/033/SRR23268633/SRR23268633_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/037/SRR23268637/SRR23268637_2.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/039/SRR23268639/SRR23268639_1.fastq.gzftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR232/036/SRR23268636/SRR23268636_1.fastq.gzprimaryOK200GenomicsDana-Farber Cancer Institutehttps://www.ebi.ac.uk/ena/browser/view/PRJNA929293Homo sapiensxref:PubMed:37963210We established Ewing sarcoma cells (SKNMC) stably expressing doxycycline-inducible shRNAs targeting the NuRD component CHD4 or the fusion transcription factor EWS-FLI1 to study their influence in gene expression regulation. Overall design: Comparative gene expression profiling of Ewing sarcoma cells (SKNMC) upon 24 and 48 hours of EWS-FLI1 or CHD4 silencing by inducible shRNA expression.ENAfalseEffect of CHD4 and EWS-FLI1 knockdown on gene expression of Ewing sarcoma cells.Effect of CHD4 and EWS-FLI1 knockdown on gene expression of Ewing sarcoma cells.2025-09-242023-11-09PRJNA929293GSE224004960637963210