is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.
The National Omics Data Encyclopedia (NODE) stores raw sequence data from next-generation sequencing technologies including 454, IonTorrent, Illumina, SOLiD, Helicos and Complete Genomics.
is a scalable and extensible informatics infrastructure which will serve as a national metabolomics resource.
The Global Natural Products Social Molecular Networking (GNPS) is a platform for providing an overview of the molecular features in mass spectrometry based metabolomics by comparing fragmentation patterns to identify chemical relationships.
PaxDb contains estimated abundance values for a large number of proteins in several different species. Furthermore, you can find information about inter-species variation of protein abundances.
European Nucleotide Archive. Note that the number of datasets below is smaller than the number of datasets returned when you click on that link. This is because the former refers to the datasets provided by ENA and the latter also includes datasets in other repositories that have re-analysed ENA data.
The database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.
is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.
NCBI Gene Expression Omnibus. Note that the number of datasets below is smaller than the number of datasets returned when you click on that link. This is because the former refers to the datasets provided by GEO and the latter also includes datasets in other repositories that have re-analysed GEO data or mirorred them.
Japan ProteOme STandard Repository is a new data repository of sharing MS raw/processed data.
The database of Genotypes and Phenotypes was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in humans.
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.
The European Variation Archive is an open-access database of all types of genetic variation data from all species.
The Expression Atlas provides information on gene expression patterns under different biological conditions. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns.
The European Genome-phenome Archive allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.
The main goal of the Physiome Model Repository is to provide a resource for the community to store, retrieve, search, reference, and reuse CellML models.
***Integration of this database into OmicsDI is in an incomplete, early testing stage.***
FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes.
***Integration of this database into OmicsDI is in an incomplete, early testing stage.***
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI.