is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.
ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.
The European Variation Archive is an open-access database of all types of genetic variation data from all species.
The Expression Atlas provides information on gene expression patterns under different biological conditions. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns.
The National Omics Data Encyclopedia (NODE) stores raw sequence data from next-generation sequencing technologies including 454, IonTorrent, Illumina, SOLiD, Helicos and Complete Genomics
is a scalable and extensible informatics infrastructure which will serve as a national metabolomics resource.
The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.
The Global Natural Products Social Molecular Networking (GNPS) is a platform for providing an overview of the molecular features in mass spectrometry based metabolomics by comparing fragmentation patterns to identify chemical relationships.
PaxDb contains estimated abundance values for a large number of proteins in several different species. Furthermore, you can find information about inter-species variation of protein abundances.
allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.
is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.
jPOSTrepo (Japan ProteOme STandard Repository) is a new data repository of sharing MS raw/processed data.
The database of Genotypes and Phenotypes (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.
The main goal of the Physiome Model Repository is to provide a resource for the community to store, retrieve, search, reference, and reuse CellML models.
***Integration of this database into OmicsDI is in an incomplete, early testing stage.***
FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes.
***Integration of this database into OmicsDI is in an incomplete, early testing stage.***
Interactive Modelling of Biological Networks.
***Integration of this database into OmicsDI is in an incomplete, early testing stage.***
allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).