Transcriptomics

Dataset Information

5

Transcription profiling of Zebrafish 1 Day post amputation vehicle or beclomethasone exposed to study regeneration


ABSTRACT: Zebrafish caudal fin regeneration is an established model to study tissue regeneration. In order to identify novel molecular signaling pathways critical for regeneration, we developed a rapid throughput in vivo regeneration assay. We screened a 2000 member structurally diverse small molecule library, followed by assessment of regenerative progression at three days post amputation. A cluster of glucocorticoids was identified among the “positive hits”. To identify the molecular targets of the activated glucocorticoid receptor, microarray analysis was performed using RNA isolated from the regenerates of control and glucocorticoid exposed zebrafish. We identified 673 transcripts that were differentially regulated. The level of expression and spatial expression pattern of select genes were completed by qPCR and by in situ hybridization, respectively. Altogether, these studies demonstrate the power of chemical genetics to identify chemical probes and their targets which will provide a path towards defining conserved regenerative pathways. Experiment Overall Design: The caudal fin of zebrafish larvae at 2days post fertilization were amputated and exposed to vehicle control alone or Beclomethasone . Regenerating fins were isolated at 1days post amputation. Three replicates were collected at each time point. 150 fins were pooled to comprise one replicate.

INSTRUMENT(S): 418 [Affymetrix]

ORGANISM(S): Danio rerio  

SUBMITTER: Robert L. Tanguay  

PROVIDER: E-GEOD-10766 | ArrayExpress | 2009-02-08

SECONDARY ACCESSION(S): GSE10766PRJNA107555

REPOSITORIES: GEO, ArrayExpress

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