Transcriptomics

Dataset Information

0

The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome


ABSTRACT: Recently, expression profiling of breast carcinomas has revealed gene signatures that predict clinical outcome, and discerned prognostically relevant breast cancer subtypes. Measurement of the degree of genomic instability provides a very similar stratification of prognostic groups. We therefore hypothesized that these features are linked. We used gene expression profiling of 48 breast cancer specimens that profoundly differed in their degree of genomic instability and identified a set of 12 genes that defines the two groups. The biological and prognostic significance of this gene set was established through survival prediction in published datasets from patients with breast cancer. Of note, the gene expression signatures that define specific prognostic subtypes in other breast cancer datasets predicted genomic instability in our samples. This remarkable congruence suggests a biological dependency of poor-prognosis gene signatures, breast cancer subtypes, genomic instability, and clinical outcome. Keywords: disease state analysis 44 samples

ORGANISM(S): Homo sapiens  

SUBMITTER: Jens K Habermann  

PROVIDER: E-GEOD-11901 | ArrayExpress | 2009-11-30

SECONDARY ACCESSION(S): GSE11901PRJNA105737

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications


Microtubule-stabilizing (MTS) agents, such as taxanes, are important chemotherapeutics with a poorly understood mechanism of action. We identified a set of genes repressed in multiple cell lines in response to MTS agents and observed that these genes are overexpressed in tumors exhibiting chromosomal instability (CIN). Silencing 22/50 of these genes, many of which are involved in DNA repair, caused cancer cell death, suggesting that these genes are involved in the survival of aneuploid cells. Ov  ...[more]

Similar Datasets

2009-12-01 | GSE11901 | GEO
2006-12-01 | E-SMDB-3878 | ArrayExpress
2006-11-20 | E-SMDB-3877 | ArrayExpress
2014-08-15 | E-GEOD-57477 | ArrayExpress
2011-11-06 | GSE10893 | GEO
2010-06-29 | E-GEOD-8957 | ArrayExpress
2008-01-28 | GSE8957 | GEO
2011-01-15 | GSE12622 | GEO
2010-06-14 | GSE19915 | GEO
2010-06-10 | E-GEOD-5307 | ArrayExpress