Transcriptomics,Multiomics

Dataset Information

282

SEA BREAM_CONFINEMENT


ABSTRACT: Juvenile gilthead sea bream of 10-15 g initial body weight were randomly distributed in eight 500-L tanks in a seawater re-circulatory system equipped with physical and biological filters, and a heat-unit system that maintained water temperature above 18-19 ºC. Fish grew from July to December at a density of 8-10 kg/m3 with an overall daily growth index of 1.9 ± 0.01. Extruded pellets (47 % protein, 21% lipid; Proaqua, Palencia, Spain) were offered to visual satiety. Feeding was stopped one day before confinement exposure, and batches of 10 fish were then transferred from two 500-L tanks to cylinder net baskets of 10-L volume (117-123 Kg/m3), suspended each one in 90-L tanks with a high flow of seawater (10 L/min) to avoid water deterioration (Oxygen > 5 ppm; unionised ammonia < 0.02 mg/L). Fish from seven additional 500-L tanks were established as control groups, and remained undisturbed prior to sampling at zero and each sampling time. At each sampling time (1.5, 3, 6, 24, 72 and 120 h), eight fish from one control and one confinement tank were netted into a bucket to be anaesthetized with 0.1 g/L 3-aminobenzoic acid ethyl ester (MS-222). Fish were killed by cervical section and liver was taken, frozen immediately in liquid nitrogen and stored at -80 ºC until RNA isolation. Only 6h, 72h and 120h were analysed on the microarray. The experimental design was a reference design with the reference being prepared from a pool of all (confined and control) RNAs used in the microarray analysis. All samples were hybridised twice (except L72C5R, L120C2F, L120S4F, L24C4F) with one being the dye swap of the other. Keywords: Time Course 72 samples

OTHER RELATED OMICS DATASETS IN: PRJNA117349

ORGANISM(S): Sparus aurata  

SUBMITTER: Grace Davey   Jaume Pérez-Sánchez  Michael Taylor Cairns  Josep Calduch-Giner  MichaelT Cairns  Benoit Houeix 

PROVIDER: E-GEOD-16633 | ArrayExpress | 2010-06-24

SECONDARY ACCESSION(S): GSE16633PRJNA117349

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-16633.README.txt Txt
E-GEOD-16633.idf.txt Idf
E-GEOD-16633.processed.1.zip Processed
E-GEOD-16633.sdrf.txt Txt
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Publications

Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.).

Calduch-Giner Josep A JA   Davey Grace G   Saera-Vila Alfonso A   Houeix Benoit B   Talbot Anita A   Prunet Patrick P   Cairns Michael T MT   Pérez-Sánchez Jaume J  

BMC genomics 20100322


<h4>Background</h4>Selection programs for growth and stress traits in cultured fish are fundamental to the improvement of aquaculture production. The gilthead sea bream (Sparus aurata) is the main aquacultured species in the Mediterranean area and there is considerable interest in the genetic improvement of this species. With the aim of increasing the genomic resources in gilthead sea bream and identifying genes and mechanisms underlying the physiology of the stress response, we developed a cDNA  ...[more]

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