Transcriptomics,Multiomics

Dataset Information

3

Methylation Pattern of Human Mesenchymal Stromal Cells


ABSTRACT: In this study, we have analyzed DNA methylation changes upon long-term culture and aging of MSC by using the HumanMethylation27 BeadChip assessing 27,578 unique CpG sites. Cells were taken from bone marrow aspirates from iliac crest (BM) of healthy donors or from the caput femoris (HIP) of elderly patients that received femoral head prosthesis.Overall, the methylation pattern was maintained throughout both long-term culture and aging but highly significant differences were observed at specific CpG sites. Notably, methylation changes in MSC were related in long-term culture and aging in vivo. Mesenchymal stromal cells (MSC) were isolated from human bone marrow as described before (Wagner et al., 2006, Exp Hematol, 34, 536-548; Wagner et al.,2008, PLoS One 21;3(5):e2213.; Wagner et al., PLoS One. 2009 Jun 9;4(6):e5846.) Cells were always replated when grown to confluency. A sample for DNA isolation was taken at every passage until the cells finally became senescent. For methylation profiles upon long-term culture we used the samples of early passage (P2) and senescent passage (PX). For methylation profiles upon aging we have only used the samples of passage 2 of younger and elderly donors. Gene expression data of these samples have been previously deposited unter GSE9593 and GSE12274.

OTHER RELATED OMICS DATASETS IN: PRJNA118875

SUBMITTER: S Pfister  Simone Bork  H Witt  S Bork  AD Ho  B Korn  P Horn  W Wagner 

PROVIDER: E-GEOD-17448 | ArrayExpress | 2010-05-14

SECONDARY ACCESSION(S): GSE17448PRJNA118875

REPOSITORIES: GEO, ArrayExpress

Dataset's files

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Action DRS
E-GEOD-17448.README.txt Txt
E-GEOD-17448.idf.txt Idf
E-GEOD-17448.processed.1.zip Processed
E-GEOD-17448.raw.1.zip Raw
E-GEOD-17448.sdrf.txt Txt
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Publications

DNA methylation pattern changes upon long-term culture and aging of human mesenchymal stromal cells.

Bork Simone S   Pfister Stefan S   Witt Hendrik H   Horn Patrick P   Korn Bernhard B   Ho Anthony D AD   Wagner Wolfgang W  

Aging cell 20091106 1


Within 2-3 months of in vitro culture-expansion, mesenchymal stromal cells (MSC) undergo replicative senescence characterized by cell enlargement, loss of differentiation potential and ultimate growth arrest. In this study, we have analyzed DNA methylation changes upon long-term culture of MSC by using the HumanMethylation27 BeadChip microarray assessing 27,578 unique CpG sites. Furthermore, we have compared MSC from young and elderly donors. Overall, methylation patterns were maintained through  ...[more]

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