Transcriptomics

Dataset Information

5

UGE and UGM Reveal Novel Signaling Pathways and Ligand-Receptor Interactions in the Primitive Prostate Stem Cell Niche


ABSTRACT: We isolated fetal murine urogenital sinus epithelium and urogenital sinus mesenchyme and determined their global gene expression profiles to define their differentially expressed regulators. To distinguish gene expression patterns that are shared by other developing epithelial/mesenchymal compartments in the embryo from those that pertain to the prostate stem cell niche, we also determine the global gene expression of epidermis and dermis of the same embryos. We identified a distinctive core of transcripts that were differentially regulated in the prostate stem cell niche. Our analysis indicates that several of the key transcriptional components that are likely to be active in the embryonic prostate stem cell niche regulate processes such as self-renewal (e.g., E2f and Ap2), lipid metabolism (e.g., Serbp1) and cell migration (e.g., Areb6 and Rreb1). Several of the promoter binding motifs that are enriched in the profiles are shared between the prostate epithelial/mesenchymal compartments and their epidermis/dermis counterparts, indicating their likely relevance in epithelial/mesenchymal signaling in primitive cellular compartments. We also focused on defining ligand-receptor interactions that may be relevant in controlling signals in the stem cell niche and identified the Wnt/beta-catenin, ephrin, Notch, sonic hedgehog, FGF, TGF-beta and bone morphogenic signaling pathways as being of likely relevance in the prostate stem cell niches. Members of the integrins family including those that bind extracellular matrix proteins such as laminin and activate latent TGF-beta are also expressed in the prostate niche.development. Keywords: Differential gene expression Six biological replicate experiments were performed for UGE. Five biological replicate experiments were performed for UGM. Four biological replicate experiments were performed for Epidermis. Four biological replicate experiments were performed for Dermis.

ORGANISM(S): Mus musculus  

SUBMITTER: Sean Wang   Christopher S Ontiveros  Xiaozhong Xiong  Lisa Marshall  Patricia E Burger  Gene Cutler  E L Wilson  Rashmi Gupta  Alexander Kamb  David Moscatelli  Roy Blum  Holger Wesche  Sarah N Salm  Jiri Zavadil 

PROVIDER: E-GEOD-17797 | ArrayExpress | 2010-08-29

SECONDARY ACCESSION(S): GSE17797PRJNA118327

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications


Signals between stem cells and stroma are important in establishing the stem cell niche. However, very little is known about the regulation of any mammalian stem cell niche as pure isolates of stem cells and their adjacent mesenchyme are not readily available. The prostate offers a unique model to study signals between stem cells and their adjacent stroma as in the embryonic prostate stem cell niche, the urogenital sinus mesenchyme is easily separated from the epithelial stem cells. Here we inve  ...[more]

Similar Datasets

2010-08-29 | GSE17797 | GEO
| GSE80083 | GEO
2015-02-20 | E-GEOD-61860 | ArrayExpress
2015-02-20 | E-GEOD-61859 | ArrayExpress
2009-06-27 | GSE16854 | GEO
2009-07-05 | E-GEOD-16854 | ArrayExpress
2016-06-24 | E-GEOD-81432 | ArrayExpress
2009-04-29 | GSE15580 | GEO
2012-03-21 | GSE36630 | GEO
2010-03-03 | GSE15101 | GEO