Transcriptomics

Dataset Information

310

RNA-Seq of oral squamous cell carcinomas and matched normal tissues


ABSTRACT: RNA-Seq was applied to oral squamous cell carcinomas and matched normal oral tissue to measure gene expression patterns and identify examples of allelic imbalance. Oral squamous cell carcinomas (OSCC) and matched normal tissue from 3 patients.

ORGANISM(S): Homo sapiens  

SUBMITTER: Brian Tuch   Rebecca R Laborde  David I Smith 

PROVIDER: E-GEOD-20116 | ArrayExpress | 2010-02-25

SECONDARY ACCESSION(S): GSE20116SRP002009PRJNA124251

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications


Due to growing throughput and shrinking cost, massively parallel sequencing is rapidly becoming an attractive alternative to microarrays for the genome-wide study of gene expression and copy number alterations in primary tumors. The sequencing of transcripts (RNA-Seq) should offer several advantages over microarray-based methods, including the ability to detect somatic mutations and accurately measure allele-specific expression. To investigate these advantages we have applied a novel, strand-spe  ...[more]

Similar Datasets

2010-02-25 | GSE20116 | GEO
2016-04-01 | E-GEOD-79795 | ArrayExpress
| GSE89924 | GEO
2013-10-22 | E-GEOD-51265 | ArrayExpress
| GSE85514 | GEO
2019-12-01 | E-MTAB-6152 | ArrayExpress
2012-09-01 | E-GEOD-31984 | ArrayExpress
| GSE31984 | GEO
2015-12-31 | E-GEOD-54861 | ArrayExpress
| GSE84846 | GEO