Transcriptomics

Dataset Information

121

Measuring transcriptional differences between Caulobacter crescentus cultured in nitrate versus ammonium as the sole nitrogen source


ABSTRACT: This study is measuring the steady-state levels of mRNA in wild-type Caulobacter crescentus grown in M2 defined medium containing either ammonium or nitrate as the sole nitrogen source. Four independent cultures of Caulobacter crecentus were grown in each of two medium conditions: M2(nitrate)glucose and M2(ammonium)glucose. Cultures in each medium type were grown to OD660=0.3 and RNA was isolated from each.

ORGANISM(S): Caulobacter vibrioides  

SUBMITTER: Sean Crosson  

PROVIDER: E-GEOD-21203 | ArrayExpress | 2010-06-20

SECONDARY ACCESSION(S): GSE21203PRJNA126287

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Interaction specificity, toxicity and regulation of a paralogous set of ParE/RelE-family toxin-antitoxin systems.

Fiebig Aretha A   Castro Rojas Cyd Marie CM   Siegal-Gaskins Dan D   Crosson Sean S  

Molecular microbiology 20100512 1


Toxin-antitoxin (TA) gene cassettes are widely distributed across bacteria, archaea and bacteriophage. The chromosome of the alpha-proteobacterium, Caulobacter crescentus, encodes eight ParE/RelE-superfamily toxins that are organized into operons with their cognate antitoxins. A systematic genetic analysis of these parDE and relBE TA operons demonstrates that seven encode functional toxins. The one exception highlights an example of a non-functional toxin pseudogene. Chromosomally encoded ParD a  ...[more]

Similar Datasets

2010-06-21 | GSE21203 | GEO
2013-12-10 | E-MEXP-3990 | ArrayExpress
2014-07-03 | E-GEOD-29589 | ExpressionAtlas
2010-06-20 | E-GEOD-21139 | ArrayExpress
2011-05-28 | E-GEOD-29589 | ArrayExpress
2011-05-01 | E-GEOD-21206 | ArrayExpress
2016-07-01 | E-GEOD-59551 | ArrayExpress
2013-03-31 | E-GEOD-43011 | ArrayExpress
2013-01-03 | E-GEOD-43243 | ArrayExpress
2011-02-01 | E-GEOD-20092 | ArrayExpress