Transcriptomics

Dataset Information

37

Gene expression profile associated with the PDZ ligand-motif of HPV16-E6 oncoprotin in the skin of transgenic mice models


ABSTRACT: The K14E6 transgenic mice developskin hyperplasia,benign tumors and skin cancer. The tumor formation capacity diminishes when E6 lacks its PDZ ligand-motif. This study aims to compare the transciptional profiles of transgenic K14E6 mice with K14E6 Δ146-151 (lacking the PDZ domain) in order to explore the role of PDZ in early skin carcinogenesis. Skin tissue from three different strains of mice were dissected for RNA extraction, processing and hybridization in Affymetrix Mouse Genome 430 2,0 array. We processed three biological replicates per strain. 3 mice were used for each replicate pool for a final RNA concentration of 3 micrograms. The arrays were analyzed using Partek Genomics suite software.

ORGANISM(S): Mus musculus  

SUBMITTER: Claudia Rangel-Escareno  Alfredo Hidalgo-Miranda   Paul F Lambert   Patricio Gariglio   Laura Uribe-Figueroa   Alejandra Roman-Rosales   Enrique Garcia-Villa   José Bonilla-Delgado   Laura I Uribe    

PROVIDER: E-GEOD-22417 | ArrayExpress | 2011-06-10

SECONDARY ACCESSION(S): GSE22417PRJNA128563

REPOSITORIES: GEO, ArrayExpress

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