Transcriptomics

Dataset Information

31

Affy_zeawall_ril_maize - Expression studies in 5 early maize RIL with contracted allelic patterns at major QTL posititions


ABSTRACT: affy_zeawall_ril_maize - Four major QTL explaining lignin content and cell wall degradability variation have been identified in the F288 x F271 RIL progeny (Roussel et al., 2002, Maydica 47: 9-20). Gene expression has been considered as a way in identification of candidate gene underlying QTL. Five lines chosen for their allelic pattern at four main QTL were considered for expression studies, two lines with all four favorable alleles (RIL99, RIL54), two lines with the unfavorable allele at bin 6.06 QTL position (RIL39 , RIL71), and one line with the unfavorable allele at bin 9.02 QTL position (RIL118). Expression study will be investigated in ear internode at two stages emerging tassel and early silking stages with two replicates. Plants were cropped at INRA Lusignan (Vienne, France) in 2009 in a bloc design with two four-row replicates. Below-ear internodes of five representative RIL plants of one row in each replicate were harvested at the two stages and pooled. Keywords: genotype comparison, time course 20 arrays - maize

ORGANISM(S): Zea mays  

SUBMITTER: Sandrine Arribat  Yves Barrière   Sandrine Balzergue   Audrey courtial   sandrine balzergue    

PROVIDER: E-GEOD-22439 | ArrayExpress| 2012-06-26

SECONDARY ACCESSION(S): GSE22439PRJNA128637

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

2012-06-17 | GSE22439 | GEO
| GSE27070 | GEO
2012-10-04 | E-GEOD-27070 | ArrayExpress
| GSE76242 | GEO
2016-02-22 | E-GEOD-77116 | ArrayExpress
2010-04-20 | GSE15912 | GEO
2014-05-03 | E-GEOD-15912 | ArrayExpress
| GSE81344 | GEO
2015-05-07 | E-GEOD-49805 | ArrayExpress
2009-03-05 | GSE11200 | GEO