Transcriptomics

Dataset Information

120

Transcriptional profile of Candida albicans DAY286 culture without ketoconazole versus DAY286 culture with 0.04 μg/ml ketoconazole, both at 20% oxygen (normoxia).


ABSTRACT: Whole genome microarray were used to generate the transcriptional profile of C.albicans in the presence of ketoconazole. RNA was isolated from DAY286 grown with or without ketoconazole in YPD medium in normoxia at 30 degree Celsius for 3.5 h, and labeled with Cy3 or Cy5. Four independent biological replicates were compared. 2 dye swaps were perfomed so that 2 out of 4 samples isolated from DAY286 in normoxic culture without ketoconazole were labeled with Cy3, and 2 were labeled with Cy5.

ORGANISM(S): Candida albicans  

SUBMITTER: John M Synnott   Alessandro Guida  Geraldine Butler 

PROVIDER: E-GEOD-24074 | ArrayExpress | 2010-11-15

SECONDARY ACCESSION(S): GSE24074PRJNA133661

REPOSITORIES: GEO, ArrayExpress

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Publications

Regulation of the hypoxic response in Candida albicans.

Synnott John M JM   Guida Alessandro A   Mulhern-Haughey Siobhan S   Higgins Desmond G DG   Butler Geraldine G  

Eukaryotic cell 20100924 11


The regulation of the response of Candida albicans to hypoxic (low-oxygen) conditions is poorly understood. We used microarray and other transcriptional analyses to investigate the role of the Upc2 and Bcr1 transcription factors in controlling expression of genes involved in cell wall metabolism, ergosterol synthesis, and glycolysis during adaptation to hypoxia. Hypoxic induction of the ergosterol pathway is mimicked by treatment with sterol-lowering drugs (ketoconazole) and requires UPC2. Expre  ...[more]

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