Genomics

Dataset Information

658

Chromatin enrichment of TRIM24, estrogen receptor and H3K4me2 in estrogen-treated and -untreated MCF7 cells


ABSTRACT: TRIM24 PHD-Bromo domains exhibit preferential binding to unmethylated H3K4 and acetylated H3K27. TRIM24 is a co-activator of estrogen receptor (ER). The results suggest that specific ER-binding sites are depleted of H3K4me2 with estrogen treatment. TRIM24 binds these sites preferentially and facilitates ER-regulated gene expression, cell survival and proliferation. ChIP performed on MCF7 cells +/- estrogen with antibodies against ER, TRIM24 and H3K4me2. ChIP assays of ER, co-activator TRIM24 and H3K4me2 were performed with two concentrations of antibody, without and 6h with estrogen treatment of MCF7 cells. Antibody-enriched samples were sequenced two times, and compared to an IgG negative control and Input. Enriched DNA sequenced by Illumina Solexa.

ORGANISM(S): Homo sapiens  

SUBMITTER: Curtis Jameson   Mehdi Keddache  Bruce J Aronow  Michelle C Barton  Kadir C Akdemir  Teresa T Yiu 

PROVIDER: E-GEOD-24166 | ArrayExpress | 2010-09-17

SECONDARY ACCESSION(S): SRP003566GSE24166PRJNA130083

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications


Recognition of modified histone species by distinct structural domains within 'reader' proteins plays a critical role in the regulation of gene expression. Readers that simultaneously recognize histones with multiple marks allow transduction of complex chromatin modification patterns into specific biological outcomes. Here we report that chromatin regulator tripartite motif-containing 24 (TRIM24) functions in humans as a reader of dual histone marks by means of tandem plant homeodomain (PHD) and  ...[more]

Similar Datasets

2010-09-17 | GSE24166 | GEO
2010-05-26 | E-GEOD-10800 | ArrayExpress
2014-07-10 | E-GEOD-55922 | ArrayExpress
2014-07-10 | E-GEOD-55921 | ArrayExpress
2015-03-11 | PXD001202 | Pride
2014-01-15 | E-GEOD-51022 | ArrayExpress
2015-05-02 | E-GEOD-65886 | ArrayExpress
2016-02-22 | E-GEOD-65313 | ArrayExpress
2010-02-01 | E-GEOD-19013 | ArrayExpress
2012-11-26 | E-GEOD-40129 | ArrayExpress