Transcriptomics

Dataset Information

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Canton S Ago1 Immunoprecipitation


ABSTRACT: modENCODE_submission_2744 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RIP-seq EXPERIMENT TYPE: RIP-seq. BIOLOGICAL SOURCE: Strain: Canton S; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Adult_ovaries

ORGANISM(S): Drosophila melanogaster  

SUBMITTER: Gregory Hannon   Eric Lai  DCC modENCODE 

PROVIDER: E-GEOD-24310 | ArrayExpress | 2010-10-18

SECONDARY ACCESSION(S): SRP003842GSE24310

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications


Since the initial annotation of miRNAs from cloned short RNAs by the Ambros, Tuschl, and Bartel groups in 2001, more than a hundred studies have sought to identify additional miRNAs in various species. We report here a meta-analysis of short RNA data from Drosophila melanogaster, aggregating published libraries with 76 data sets that we generated for the modENCODE project. In total, we began with more than 1 billion raw reads from 187 libraries comprising diverse developmental stages, specific t  ...[more]

Publication: 1/2

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