Dataset Information

Canton S Ago1 Immunoprecipitation

ABSTRACT: modENCODE_submission_2744 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RIP-seq EXPERIMENT TYPE: RIP-seq. BIOLOGICAL SOURCE: Strain: Canton S; Developmental Stage: Adult Female; Genotype: wild type; Sex: Female; EXPERIMENTAL FACTORS: Adult_ovaries

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Gregory Hannon Eric Lai DCC modENCODE

PROVIDER: E-GEOD-24310 | ArrayExpress | 2010-10-18

SECONDARY ACCESSION(S): SRP003842GSE24310

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Berezikov Eugene E Robine Nicolas N Samsonova Anastasia A Westholm Jakub O JO Naqvi Ammar A Hung Jui-Hung JH Okamura Katsutomo K Dai Qi Q Bortolamiol-Becet Diane D Martin Raquel R Zhao Yongjun Y Zamore Phillip D PD Hannon Gregory J GJ Marra Marco A MA Weng Zhiping Z Perrimon Norbert N Lai Eric C EC

Genome research 20101222 2

Since the initial annotation of miRNAs from cloned short RNAs by the Ambros, Tuschl, and Bartel groups in 2001, more than a hundred studies have sought to identify additional miRNAs in various species. We report here a meta-analysis of short RNA data from Drosophila melanogaster, aggregating published libraries with 76 data sets that we generated for the modENCODE project. In total, we began with more than 1 billion raw reads from 187 libraries comprising diverse developmental stages, specific t ...[more]

PMID: 21177969

Publication: 1/2

Dataset Information

Canton S Ago1 Immunoprecipitation

Publications

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

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