Transcriptomics

Dataset Information

298

RNA-Seq analysis of microRNA expression profiles in mouse primary CFU-E late erythroid progenitors and Ter119+ mature erythroblasts


ABSTRACT: Using RNA-seq technology, we quantitatively determined the expression profile of microRNAs during mouse terminal erythroid differentiation. CFU-E erythroid progenitors were isolated from E14.5 fetal liver as the Ter119, B220, Mac-1, CD3 and Gr-1 negative, C-Kit positive and 20% high CD71 population. Mature Ter119+ erythroblasts were isolated from E14.5 fetal liver as C-Kit negative and Ter119 positive population. Consistent with nuclear condensation and global gene expression shut down during terminal erythroid differentiation, we found that the majority of microRNAs are downregulated in more mature Ter119+ erythroblasts compared with CFU-E erythroid progenitors. Examination of microRNA expression profiles in 2 cell types

ORGANISM(S): Mus musculus  

SUBMITTER: Lingbo Zhang   Johan Flygare 

PROVIDER: E-GEOD-25602 | ArrayExpress | 2011-06-09

SECONDARY ACCESSION(S): SRP004639GSE25602PRJNA134245

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications

miR-191 regulates mouse erythroblast enucleation by down-regulating Riok3 and Mxi1.

Zhang Lingbo L   Flygare Johan J   Wong Piu P   Lim Bing B   Lodish Harvey F HF  

Genes & development 20101231 2


Using RNA-seq technology, we found that the majority of microRNAs (miRNAs) present in CFU-E erythroid progenitors are down-regulated during terminal erythroid differentiation. Of the developmentally down-regulated miRNAs, ectopic overexpression of miR-191 blocks erythroid enucleation but has minor effects on proliferation and differentiation. We identified two erythroid-enriched and developmentally up-regulated genes, Riok3 and Mxi1, as direct targets of miR-191. Knockdown of either Riok3 or Mxi  ...[more]

Similar Datasets

2011-06-09 | GSE25602 | GEO
2012-02-07 | E-GEOD-35592 | ArrayExpress
2011-09-13 | E-GEOD-32110 | ArrayExpress
2012-03-31 | E-GEOD-34125 | ArrayExpress
2014-01-29 | E-GEOD-54457 | ArrayExpress
2015-12-09 | E-GEOD-57004 | ArrayExpress
2011-08-23 | E-GEOD-27893 | ArrayExpress
| GSE95017 | GEO
2013-11-07 | E-GEOD-52126 | ArrayExpress
2011-09-13 | E-GEOD-32111 | ArrayExpress