Transcriptomics

Dataset Information

591

The Ecoresponsive Genome of Daphnia pulex: Empirical annotation of the Daphnia pulex genome


ABSTRACT: This SuperSeries is composed of the following subset Series: GSE25841: Evolutionary Diversification of Duplicated Genes; Experiment A GSE25843: Evolutionary Diversification of Duplicated Genes; Experiments B-I, M-P GSE25845: Evolutionary Diversification of Duplicated Genes; Experiments B-I GSE25850: Evolutionary Diversification of Duplicated Genes; Experiment J GSE25851: Evolutionary Diversification of Duplicated Genes; Experiment L, K GSE25852: Empirical Annotation of the Daphnia pulex genome; Experiment B GSE25855: Empirical Annotation of the Daphnia pulex genome; Experiment A GSE25856: Empirical Annotation of the Daphnia pulex genome; Experiment C Refer to individual Series

ORGANISM(S): Daphnia pulex  

SUBMITTER: John K Colbourne   Jeong-Hyeon Choi  Jacqueline Lopez 

PROVIDER: E-GEOD-25823 | ArrayExpress | 2011-02-01

SECONDARY ACCESSION(S): GSE25823PRJNA135637

REPOSITORIES: GEO, ArrayExpress

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Publications

The ecoresponsive genome of Daphnia pulex.

Colbourne John K JK   Pfrender Michael E ME   Gilbert Donald D   Thomas W Kelley WK   Tucker Abraham A   Oakley Todd H TH   Tokishita Shinichi S   Aerts Andrea A   Arnold Georg J GJ   Basu Malay Kumar MK   Bauer Darren J DJ   Cáceres Carla E CE   Carmel Liran L   Casola Claudio C   Choi Jeong-Hyeon JH   Detter John C JC   Dong Qunfeng Q   Dusheyko Serge S   Eads Brian D BD   Fröhlich Thomas T   Geiler-Samerotte Kerry A KA   Gerlach Daniel D   Hatcher Phil P   Jogdeo Sanjuro S   Krijgsveld Jeroen J   Kriventseva Evgenia V EV   Kültz Dietmar D   Laforsch Christian C   Lindquist Erika E   Lopez Jacqueline J   Manak J Robert JR   Muller Jean J   Pangilinan Jasmyn J   Patwardhan Rupali P RP   Pitluck Samuel S   Pritham Ellen J EJ   Rechtsteiner Andreas A   Rho Mina M   Rogozin Igor B IB   Sakarya Onur O   Salamov Asaf A   Schaack Sarah S   Shapiro Harris H   Shiga Yasuhiro Y   Skalitzky Courtney C   Smith Zachary Z   Souvorov Alexander A   Sung Way W   Tang Zuojian Z   Tsuchiya Dai D   Tu Hank H   Vos Harmjan H   Wang Mei M   Wolf Yuri I YI   Yamagata Hideo H   Yamada Takuji T   Ye Yuzhen Y   Shaw Joseph R JR   Andrews Justen J   Crease Teresa J TJ   Tang Haixu H   Lucas Susan M SM   Robertson Hugh M HM   Bork Peer P   Koonin Eugene V EV   Zdobnov Evgeny M EM   Grigoriev Igor V IV   Lynch Michael M   Boore Jeffrey L JL  

Science (New York, N.Y.) 20110201 6017


We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that  ...[more]

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