Transcriptomics

Dataset Information

33

Expression data from the comparison between CD8 single positive (SP) thymocytes of CIITAtgpIV-/- mouse and B6 WT mouse


ABSTRACT: Thymocyte-thymocyte interaction can be very efficiently occur in CIITAtgpIV-/- mouse. We analyzed the gene expression profile between CD8+ T cells generated in CIITAtgpIV-/- mouse, and compared it to that of CD8+ T cells from B6 WT mouse. In this dataset, we include the expression data obtained from CD8 single positive thymocytes generated in CIITAtgpIV-/- mouse and B6 WT mouse. These data are used to obtain 279 genes that showed differentially increased expression in CIITAtgpIV-/- mouse. Total 1 sample from 2-4 CIITAtgpIV-/- mice and B6 WT mice were analyzed. We compared these using Affymetrix Expression console1.1, R affy-package(2.9.2), DAVID. Genes with an FDR≤10% and a fold-change ≥2 were selected.

ORGANISM(S): Mus musculus  

SUBMITTER: Y J Lee  B H Kang   Hye Sook Min    

PROVIDER: E-GEOD-26090 | ArrayExpress | 2010-12-18

SECONDARY ACCESSION(S): GSE26090PRJNA135397

REPOSITORIES: GEO, ArrayExpress

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