Transcriptomics

Dataset Information

5

Gene Expression Profiling of Fixed Tissues of Lymph Node Metastasis in Hepatocellular Carcinoma


ABSTRACT: RNA was extracted from formalin-fixed specimens of paired intratumoral and peritumoral tissues of patients with lymph node-positive (n=20) or negative (n=20) HCC. A cDNA-mediated annealing, selection, extension, and ligation assay was performed with an array of 502 known cancer-related genes to identify differentially expressed genes in 80 RNA samples. Total RNA was purified from the tissue specimens using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol. DASL experiments were performed to identify genes that were differentially expressed between the lymph node metastasis (LNM) and non-lymph node metastasis (NLNM) groups of matched intratumoral and peritumoral tissues by using A cDNA-mediated annealing, selection, extension, and ligation assay.

ORGANISM(S): Homo sapiens  

SUBMITTER: Zuo-Lin Xiang   Zhao-Chong Zeng  Jia Fan  Zhao-You Tang  Dong-Mei Gao  Zuolin Xiang  Hai-Ying Zeng 

PROVIDER: E-GEOD-28248 | ArrayExpress | 2011-08-03

SECONDARY ACCESSION(S): GSE28248PRJNA139579

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Gene expression profiling of fixed tissues identified hypoxia-inducible factor-1α, VEGF, and matrix metalloproteinase-2 as biomarkers of lymph node metastasis in hepatocellular carcinoma.

Xiang Zuo-Lin ZL   Zeng Zhao-Chong ZC   Fan Jia J   Tang Zhao-You ZY   Zeng Hai-Ying HY   Gao Dong-Mei DM  

Clinical cancer research : an official journal of the American Association for Cancer Research 20110628 16


PURPOSE: Hepatocellular carcinoma (HCC) most often develops in patients infected with hepatitis B or hepatitis C virus. Differential gene expression profiling is useful for investigating genes associated with lymph node metastasis (LNM). We screened genes to identify potential biomarkers for LNM in HCC. EXPERIMENTAL DESIGN: RNA was extracted from formalin-fixed specimens of paired intratumoral and peritumoral tissues of patients with lymph node-positive (n = 36) or negative (n = 36) HCC. A cDNA-  ...[more]

Similar Datasets

2011-08-04 | GSE28248 | GEO
2011-10-28 | GSE27635 | GEO
2011-10-27 | E-GEOD-27635 | ArrayExpress
| GSE36147 | GEO
2013-05-01 | E-GEOD-36147 | ArrayExpress
2012-03-08 | E-GEOD-36335 | ArrayExpress
2013-04-01 | E-GEOD-44353 | ArrayExpress
2011-09-22 | E-GEOD-31123 | ArrayExpress
| EGAS00001002114 | EGA
2011-06-22 | GSE23385 | GEO