Transcriptomics,Multiomics

Dataset Information

2

Gene expression data from yeast exposure to alachlor


ABSTRACT: The world-wide used herbicide alachlor is among the priority substances listed in the European Water Framework Directive. We aimed at finding molecular biomarkers in the model yeast Saccharomyces cerevisiae that may be used to predict potential cytotoxic effects of this xenobiotic while providing mechanistic clues possibly relevant for experimentally less accessible non-target eukaryotes. We used microarrays to carry out a gene expression profiling analysis in S. cereviseae strain BY4741 upon 2 hours exposure to alachlor at concentrations exerting slight to moderate levels of phenotypic effects (inhibition of yeast growth rate). Two exposure scenarios were analysed, namely the lowest observed effect concentration (LOEC; ~8% growth inhibition) and the 20%-inhibitory concentration (IC20), compared to control cells not exposed to the herbicide (CT02). Exponential standardized cell suspensions of S. cerevisiae BY4741 in minimal growth medium were incubated in the presence of 110 or 200 mg/L of ALA (corresponding to the LOEC and the IC20, respectively, of alachlor) or in medium non-supplemented with the herbicide (control cells, CT02) during 2 h, and used for total RNA isolation and hybridization on Affymetrix microarrays. Exposure experiments with each concentration of alachlor versus controls were carried out independently. For each exposure condition, independent biological triplicates were processed and analysed.

OTHER RELATED OMICS DATASETS IN: PRJNA138931

ORGANISM(S): Saccharomyces Cerevisiae

SUBMITTER: Fátima N Gil   Cristina Anjinho Viegas  Jörg D Becker  Cristina A Viegas 

PROVIDER: E-GEOD-28677 | ArrayExpress | 2011-08-27

SECONDARY ACCESSION(S): GSE28677PRJNA138931

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-28677.README.txt Txt
E-GEOD-28677.eSet.r Other
E-GEOD-28677.idf.txt Idf
E-GEOD-28677.processed.1.zip Processed
E-GEOD-28677.raw.1.zip Raw
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Publications

Transcriptional profiling in Saccharomyces cerevisiae relevant for predicting alachlor mechanisms of toxicity.

Gil Fátima N FN   Gonçalves Alina C AC   Jacinto Maria João MJ   Becker Jörg D JD   Viegas Cristina A CA  

Environmental toxicology and chemistry 20110919 11


Alachlor has been a commonly applied herbicide and is a substance of ecotoxicological concern. The present study aims to identify molecular biomarkers in the eukaryotic model Saccharomyces cerevisiae that can be used to predict potential cytotoxic effects of alachlor, while providing new mechanistic clues with possible relevance for experimentally less accessible eukaryotes. It focuses on genome-wide expression profiling in a yeast population in response to two exposure scenarios exerting effect  ...[more]

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