Transcriptomics

Dataset Information

885

Genome-wide transcriptome analysis of UV response in D. gobiensis I-0


ABSTRACT: We report genome-wide transcriptional UV response in Deincoccus gobiensis Examination of the transcriptomes before and after UV irradiation in Deinococcus gobiensis

ORGANISM(S): Deinococcus gobiensis  

SUBMITTER: Menglong Yuan   Min Lin 

PROVIDER: E-GEOD-29088 | ArrayExpress | 2011-12-30

SECONDARY ACCESSION(S): SRP006706GSE29088PRJNA140309

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations.

Yuan Menglong M   Chen Ming M   Zhang Wei W   Lu Wei W   Wang Jin J   Yang Mingkun M   Zhao Peng P   Tang Ran R   Li Xinna X   Hao Yanhua Y   Zhou Zhengfu Z   Zhan Yuhua Y   Yu Haiying H   Teng Chao C   Yan Yongliang Y   Ping Shuzhen S   Wang Yingdian Y   Lin Min M  

PloS one 20120328 3


The desert is an excellent model for studying evolution under extreme environments. We present here the complete genome and ultraviolet (UV) radiation-induced transcriptome of Deinococcus gobiensis I-0, which was isolated from the cold Gobi desert and shows higher tolerance to gamma radiation and UV light than all other known microorganisms. Nearly half of the genes in the genome encode proteins of unknown function, suggesting that the extreme resistance phenotype may be attributed to unknown ge  ...[more]

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