Transcriptomics

Dataset Information

299

ChimeraScan: A tool for identifying chimeric transcription in sequencing data


ABSTRACT: Next Generation Sequencing technologies have enabled de novo gene fusion discovery that could reveal candidates with therapeutic significance in cancer. Here we present an open-source software package, ChimeraScan, for the discovery of chimeric transcription between two independent transcripts. Three cancer cell lines with known gene fusions

ORGANISM(S): Homo sapiens  

SUBMITTER: Matthew Iyer   Christopher Maher  Arul M Chinnaiyan 

PROVIDER: E-GEOD-29098 | ArrayExpress | 2011-09-01

SECONDARY ACCESSION(S): SRP006719GSE29098PRJNA140329

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications

ChimeraScan: a tool for identifying chimeric transcription in sequencing data.

Iyer Matthew K MK   Chinnaiyan Arul M AM   Maher Christopher A CA  

Bioinformatics (Oxford, England) 20110811 20


Next generation sequencing (NGS) technologies have enabled de novo gene fusion discovery that could reveal candidates with therapeutic significance in cancer. Here we present an open-source software package, ChimeraScan, for the discovery of chimeric transcription between two independent transcripts in high-throughput transcriptome sequencing data.http://chimerascan.googlecode.comcmaher@dom.wustl.eduSupplementary data are available at Bioinformatics online. ...[more]

Similar Datasets

2019-11-12 | PXD010845 | Pride
2011-08-02 | E-GEOD-25183 | ArrayExpress
2011-05-09 | E-GEOD-29155 | ArrayExpress
2013-09-25 | E-GEOD-51144 | ArrayExpress
2016-07-29 | E-GEOD-71551 | ArrayExpress
2019-05-14 | E-GEOD-67812 | ExpressionAtlas
2014-05-21 | E-GEOD-49091 | ArrayExpress
2015-04-14 | E-GEOD-67812 | ArrayExpress
2015-04-01 | E-GEOD-59571 | ArrayExpress
2014-03-06 | E-GEOD-53098 | ArrayExpress