Transcriptomics,Multiomics

Dataset Information

5

Stimulation of BL2 cell line with lipopolysaccharide (LPS) for 6h


ABSTRACT: Identification of genes up or down regulated in LPS stimulated samples in comparison to control samples. 3 LPS stimulated samples vs. 3 controls were analyzed

OTHER RELATED OMICS DATASETS IN: PRJNA141185

ORGANISM(S): Homo sapiens  

SUBMITTER: Matthias Maneck   Alexandra Schrader  Dieter Kube  Rainer Spang 

PROVIDER: E-GEOD-29700 | ArrayExpress | 2011-07-01

SECONDARY ACCESSION(S): GSE29700PRJNA141185

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-29700.README.txt Txt
E-GEOD-29700.eSet.r Other
E-GEOD-29700.idf.txt Idf
E-GEOD-29700.processed.1.zip Processed
E-GEOD-29700.raw.1.zip Raw
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Publications

Genomic data integration using guided clustering.

Maneck Matthias M   Schrader Alexandra A   Kube Dieter D   Spang Rainer R  

Bioinformatics (Oxford, England) 20110617 16


<h4>Motivation</h4>In biomedical research transcriptomic, proteomic or metabolomic profiles of patient samples are often combined with genomic profiles from experiments in cell lines or animal models. Integrating experimental data with patient data is still a challenging task due to the lack of tailored statistical tools.<h4>Results</h4>Here we introduce guided clustering, a new data integration strategy that combines experimental and clinical high-throughput data. Guided clustering identifies s  ...[more]

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