Transcriptomics

Dataset Information

300

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using RNA-Seq


ABSTRACT: Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other. Samples were taken from mycelium grown in both complete medium and in glucose minimal medium. One replicate for each sample.

ORGANISM(S): Pyricularia oryzae  

SUBMITTER: Darren Mark Soanes   Angus L Dawe  Nicholas J Talbot  Konrad H Paszkiewicz  Apratim Chakrabarti  Darren M Soanes 

PROVIDER: E-GEOD-30327 | ArrayExpress | 2012-02-13

SECONDARY ACCESSION(S): SRP007402GSE30327PRJNA143617

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae.

Soanes Darren M DM   Chakrabarti Apratim A   Paszkiewicz Konrad H KH   Dawe Angus L AL   Talbot Nicholas J NJ  

PLoS pathogens 20120209 2


The rice blast fungus Magnaporthe oryzae is one of the most significant pathogens affecting global food security. To cause rice blast disease the fungus elaborates a specialised infection structure called an appressorium. Here, we report genome wide transcriptional profile analysis of appressorium development using next generation sequencing (NGS). We performed both RNA-Seq and High-Throughput SuperSAGE analysis to compare the utility of these procedures for identifying differential gene express  ...[more]

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