Transcriptomics

Dataset Information

306

Transcription profiling by high throughput sequencing from seedling, root, and floral buds of two Arabidopsis thaliana accessions


ABSTRACT: We sequenced messenger RNA isolated from seeding, root, and floral bud tissue for 2 MAGIC founder accessions of Arabidopsis thaliana. The resulting data was used for validation of gene models, and provides a resource to assess tissue-specific expression. Examination of RNA expression across tissues (seedling, root, floral bud) for 2 accessions (Col-0, Can-0).

OTHER RELATED OMICS DATASETS IN: E-GEOD-30720

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Richard M Clark  

PROVIDER: E-GEOD-30795 | ArrayExpress | 2011-08-29

SECONDARY ACCESSION(S): GSE30795SRP007511PRJNA154709

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications


Genetic differences between Arabidopsis thaliana accessions underlie the plant's extensive phenotypic variation, and until now these have been interpreted largely in the context of the annotated reference accession Col-0. Here we report the sequencing, assembly and annotation of the genomes of 18 natural A. thaliana accessions, and their transcriptomes. When assessed on the basis of the reference annotation, one-third of protein-coding genes are predicted to be disrupted in at least one accessio  ...[more]

Similar Datasets

2013-12-11 | E-GEOD-53197 | ArrayExpress
2016-04-07 | E-GEOD-53197 | ExpressionAtlas
2012-12-27 | E-GEOD-40162 | ArrayExpress
2014-05-27 | E-GEOD-42891 | ArrayExpress
2013-10-22 | E-GEOD-47665 | ArrayExpress
2014-12-08 | E-GEOD-57601 | ArrayExpress
2017-07-24 | PXD006710 | Pride
2011-03-31 | E-GEOD-28275 | ArrayExpress
2009-11-23 | E-GEOD-17943 | ArrayExpress
2012-09-10 | E-GEOD-36128 | ArrayExpress