Transcriptomics,Genomics

Dataset Information

62

Dynamic changes to nucleosome occupancy and genomic expression in yeast responding to oxidative stress


ABSTRACT: This SuperSeries is composed of the following subset Series: GSE30897: Nucleosome occupancy in yeast BY4741and a strain lacking MSN2 and MSN4 responding to 20 min treatment with 0.4mM H2O2 GSE30898: Msn2p occupancy dynamics in yeast BY4741 responding to 0.4mM H2O2 over time (0-60 min) GSE30899: Gene expression dynamics in yeast BY4741 and a strain lacking MSN2 and MSN4 responding to 0.4mM H2O2 over time (0-60min) GSE30900: Nucleosome occupancy dynamics in yeast BY4741 responding to 0.4mM H2O2 over time (0-60 min) Refer to individual Series

ORGANISM(S): Saccharomyces cerevisiae S288C  

SUBMITTER: Dana J Huebert   Audrey P Gasch 

PROVIDER: E-GEOD-30901 | ArrayExpress | 2012-06-17

SECONDARY ACCESSION(S): GSE30901PRJNA144239

REPOSITORIES: GEO, ArrayExpress

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Publications

Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators.

Huebert Dana J DJ   Kuan Pei-Fen PF   Keleş Sündüz S   Gasch Audrey P AP  

Molecular and cellular biology 20120221 9


The response to stressful stimuli requires rapid, precise, and dynamic gene expression changes that must be coordinated across the genome. To gain insight into the temporal ordering of genome reorganization, we investigated dynamic relationships between changing nucleosome occupancy, transcription factor binding, and gene expression in Saccharomyces cerevisiae yeast responding to oxidative stress. We applied deep sequencing to nucleosomal DNA at six time points before and after hydrogen peroxide  ...[more]

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