Transcriptomics

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Expression analysis of Aspergillus nidulans AN1599 (PbcR) overexpression mutant


ABSTRACT: Investigation of whole genome gene expression level changes in Aspergillus nidulans AN1599 (PbcR) overexpression mutant, compared to the FGSC A4 wild-type strain. Overexpression of the Zn(II)2Cys6 –type transcription factor, AN1599.4 (PbcR, pimaradiene biosynthetic cluster regulator), activates a secondary metabolite gene cluster in Aspergillus nidulans. Activation of the pathway in Aspergillus nidulans lead to a production of ent-pimara-8(14),15-diene. 12x135K array of two separate cultures of FGSC A4 and two separate cultures of oe:AN1599(PbcR) with three separate RNA extractions from each culture. Each 135K array measures expression level of 10,546 genes with 6 probes/transcript. In addition, the array format contains tiling probes for 36 longer transcripts. All probes are in duplicates, giving the total number of 137,562 probes per array.

ORGANISM(S): Aspergillus nidulans  

SUBMITTER: Kirsi Bromann   

PROVIDER: E-GEOD-32954 | ArrayExpress | 2012-04-15

SECONDARY ACCESSION(S): GSE32954PRJNA146471

REPOSITORIES: GEO, ArrayExpress

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