Transcriptomics

Dataset Information

35

Expression analysis of Ralstonia solanacearum strain UW551 at 20°C and 28°C in rich medium (CPG) and in planta


ABSTRACT: Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain UW551 at 20°C and 28°C in culture and in planta. The temperatel strain UW551 can wilt and cause full-blown disease on tomato plants at 28°C as well as at 20°C. A 16 array study using total RNA recovered from the following: 8 separate cultures of Ralstonia solanacearum strain UW551 grown in rich medium-CPG (4 grown at 20°C and 4 grown at 28°C) 8 separate in planta samples of Ralstonia solanacearum strain UW551 harvested from diseased tomato plants cv. BonnyBest (4 recovered from plants grown at 20°C and 4 from plants grown at 28°C) Each array (4-plex format) measures the expression level of 4318 genes from Ralstonia solanacearum strain UW551 with 2 to 6, 40-70 mer probes per gene, with two-fold technical redundancy. The arrays also contain probes for intergenic regions with no technical replicates.

ORGANISM(S): Ralstonia solanacearum UW551  

SUBMITTER: Caitilyn Allen  Lavanya Babujee   Jonathan M Jacobs   Fanhong Meng    

PROVIDER: E-GEOD-33661 | ArrayExpress| 2014-05-02

SECONDARY ACCESSION(S): GSE33661PRJNA154303

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

2014-05-02 | E-GEOD-33657 | ArrayExpress
2014-05-02 | E-GEOD-33662 | ArrayExpress
2012-10-18 | E-GEOD-31807 | ArrayExpress
2014-05-01 | E-GEOD-19178 | ArrayExpress
| GSE31807 | GEO
| GSE76071 | GEO
2010-11-22 | GSE19178 | GEO
| GSE92631 | GEO
2014-05-03 | E-MTAB-542 | ArrayExpress
2009-12-10 | GSE19273 | GEO